Lyun034757.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- -
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000231.1:214739-216286[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.2 1.7e+03 0.4 0.2 22 30 45 53 41 75 0.79 2 12 0.0074 64 5.0 0.1 21 46 100 125 92 137 0.78 3 12 0.057 4.9e+02 2.2 0.1 21 52 186 217 177 218 0.86 4 12 0.024 2e+02 3.4 0.2 23 52 216 245 212 247 0.84 5 12 0.23 1.9e+03 0.3 0.2 21 43 242 264 226 273 0.66 6 12 0.00042 3.6 9.0 0.0 21 46 270 295 263 300 0.85 7 12 0.04 3.4e+02 2.7 0.0 23 45 328 350 318 354 0.90 8 12 0.0022 19 6.7 0.0 21 52 354 385 351 387 0.90 9 12 0.01 87 4.6 0.4 23 46 384 407 381 410 0.85 10 12 0.016 1.4e+02 3.9 0.2 25 46 414 435 409 442 0.78 11 12 0.025 2.1e+02 3.3 0.1 23 52 440 469 436 470 0.79 12 12 8.3e-05 0.71 11.3 0.0 23 45 468 490 465 493 0.91
Sequence Information
- Coding Sequence
- ATGAATCAAACGGAGGTAAAAATCAAATGCGAGGCTTTAGAAAtaagttgtaattttgaaattaaaaaggaaGAATCCGAAGATGTGGAATATAATTTACATCACTCGATCGACATTAAAGACGAAGGGGATGAAAAACCTCGAACATGTACTATGTGCGACTATAAATCTTGGAACAAGTCAGAATGGAAACTTCATTTGAGAAGTCATGCAATTGAAACGCCTTATGTGTGTGCCCTTTGTGGCCATAAATCTTCGCGGAAGACATTGCTAAAATACCACATTAGAACccacacaggtgagaaaccatttacatgtgcaatttgtgattataaagcTTCAATGAAAGCAACTTTGATACGGCATATGAACGTTCACAGAGAGGAAAAACtttttgcatgtaaaatttgcgattataaaggTTTAACCAAACAACACGTAAAGTACCATATGAAAATGCATGTTGCCGTTCCGACTGTATGTGGTGGTTCTgaaatttgcgactataaaagTACTATCCCACAACATTTGCAGCGACACATGAAAACCCATACtggggagaaaccgttttccTGCAATACTTGCAGTCGTACGTTTTCTAGAAAAGAACATTTGTTTCGTCATATGCAGATGCATAGCAATTACAAGCCGTTTGGTTGTGAATTTTGTAACTTCAAATGTAGGTCGAGAAGTAATTTAAAGGAACACTTGAGGGTTCACAGTGGCGAAAAGCCGTTTGCTTGCGAATTATGCGATTTTAAATGTACAACTAAAAGAAGTCTAAACAACCACAAAAAGAcgcatactggcgagaaaccgtttacttGTTGGATATGCGATTATAAATGCATACAGAAACAAGGTTTGAAAAAACATCTGAAGGTTCACAACGATGGGAAGTTGTTCCCTTGTGAAATTTGCGAGCTTAAATTATCAACTAAGGGCAGTTTGAAAGATCACCTCAAGATTCATGCCGATAGGCGACCGTTCGAATGTAAACTTTGTGGTAAAAAAGTTAGATCTAAAGCTGGTTTGAGAAACCACTTAAAAACGCAcaccggggaaaaaccgttcCCCTGTGAAATATGCAGTTTAAAATTTGCActgaaggaaaatttaaaaaagcatctGAAGATTCACAATGGCgtgaaaccgtttgcttgtgaaatttgcgattacAAATGTATACGAAAAAACAGTTTGAGAACGCATTTGAAAATTCACACTGGCGATAGAGCATTCACTTGTGGAATTTGCGGATATAAATGTATAGAGAACCACACGTTGAAGAGGCATTTGAAGATTCACATCGGGGAGAAAGCATTCGGTTGTgcaatttgcgattataaatgtgtaCTCAAGCAAAGTTTGAAAACGCATTTGAAAATTCACACAGGCGCCAAACCCTTCACTTGTGGAATTTGCGGTTATAAATTTACGcagaaacaaaatttgaatcgGCATTTGAAGACTCACACTGGCGAAGGAAGTTCTACCTCTGGAATTTGTGCAATCGAAACAATAATGGTAAAATCTGAGATCTTTTAG
- Protein Sequence
- MNQTEVKIKCEALEISCNFEIKKEESEDVEYNLHHSIDIKDEGDEKPRTCTMCDYKSWNKSEWKLHLRSHAIETPYVCALCGHKSSRKTLLKYHIRTHTGEKPFTCAICDYKASMKATLIRHMNVHREEKLFACKICDYKGLTKQHVKYHMKMHVAVPTVCGGSEICDYKSTIPQHLQRHMKTHTGEKPFSCNTCSRTFSRKEHLFRHMQMHSNYKPFGCEFCNFKCRSRSNLKEHLRVHSGEKPFACELCDFKCTTKRSLNNHKKTHTGEKPFTCWICDYKCIQKQGLKKHLKVHNDGKLFPCEICELKLSTKGSLKDHLKIHADRRPFECKLCGKKVRSKAGLRNHLKTHTGEKPFPCEICSLKFALKENLKKHLKIHNGVKPFACEICDYKCIRKNSLRTHLKIHTGDRAFTCGICGYKCIENHTLKRHLKIHIGEKAFGCAICDYKCVLKQSLKTHLKIHTGAKPFTCGICGYKFTQKQNLNRHLKTHTGEGSSTSGICAIETIMVKSEIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00927950;
- 90% Identity
- iTF_00927950;
- 80% Identity
- iTF_00927950;