Lyun005216.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- RREB1
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000009.1:3133982-3138202[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0029 0.3 12.8 2.2 2 23 62 84 62 84 0.90 2 12 0.4 43 6.0 0.7 1 19 133 151 133 152 0.89 3 12 0.046 4.9 9.0 0.2 1 23 253 275 253 275 0.97 4 12 0.0045 0.47 12.2 0.7 1 23 284 306 284 306 0.96 5 12 0.0051 0.54 12.0 3.7 1 23 312 335 312 335 0.97 6 12 0.00042 0.045 15.4 1.5 1 23 739 762 739 762 0.96 7 12 0.00029 0.031 15.9 0.6 2 23 988 1009 987 1009 0.97 8 12 0.42 45 6.0 7.2 1 23 1015 1038 1015 1038 0.97 9 12 0.00012 0.013 17.2 1.2 1 23 1067 1091 1067 1091 0.97 10 12 0.34 36 6.3 2.5 1 23 1156 1179 1156 1179 0.94 11 12 0.02 2.1 10.1 0.4 3 23 1227 1247 1225 1247 0.93 12 12 0.016 1.7 10.5 7.8 1 23 1253 1275 1253 1275 0.98
Sequence Information
- Coding Sequence
- ATGAGCAAAAAGCGAAATTGCACTAACAtggatgaaaacaaaaataacaaaagaaccAAGTTACAAGAATCGTCTTACGACTCTAGTCAAACTTATGCTTGTCCTGTATGCAGACGAGATGATTTTACTTCTACCGATATTTTGGAAATACATTTGGAAGATAATCATCCAGATTTTCCTGCAAAATGTAACATTTGCAAtaaatcgtttaaaaatttgaaagtattacGCGAACATAAGTTTAATATGCACACCAAAAATGGAAGCAAACACCAAAAAAATTCCGTCCTTGGATTTCAAGATTTAACTTTTGTCGATTTTTCGAGTCAAAAATTCCCTTATATAGCGAAATATGAATGCGAAAAAAATCTACACAAACCAGCTAGTGCACCAAAGTTCCAATGCAATAAGTGTTCAAGAGCATTCCCATGTTCCATGTCCCTGGAGATTCATGTCCCCGATTGTACGGCAAATCTTCAAAGTAAGTTGCAAAACTCGGAAGATGGAAGAGAAGATCAGATATTAAAATACAACACGAACATTCTACCCCCATCCGATACTAAAGACTTAGCCGACATACAATCGATCATTTCTATCACTACAAACGGCAGCTTATTACACCAACTTCAATCAAATCCAAACGAATTAAACTCAATAAAACAAGAAAGTGAACTTGATACTTCCAGAAACGAAAACGACGAAGAATCGCAAGATATCTTTGCAACTGAATTTCGTAAAATGAAAATACGTGGCGAATTTCCTTGTAGACTTTGTCGTGCAGTGTTTCCTAACTTGCGAGCTTTAAAAGGTCACAACAGATCTCATTTAAATGGAAACAATAACGGAATGTATCTCTGCAATATGTGCCCGCACTCGTCTTTAGATAAAGCGGCCCTCATAAGGCACATGAGAACGCACAACGGTGATCGTCCTTACGAGTGCTCACTCTGTAAGTACGCTTTTACAACAAAAGCAAATTGCGAAAGACACCTCAAGAATAGGCATGCCAAAAATACACGAGAAGAAGTAAAGAAAGCCATTATTTATCACCCATCTGAAGATCCCAGCAACGAGGAAATAAGTAAAATGCTATCACACGAAGAAACAAATAAAGCACTTCTTCTCTCGAATACTCACAAAAACGTCAATAAACCGACTGAGAAAGCAAAAATTATGACACCAAATATTACAAATCTTCTAGTAACAAGCCCAACAAAAAATCCAATTTCATCCGAAAATATCAGCAATTTCAATATTGAAGCAAATATATCCCGATGTTATTCTGGAAATGAAATTCCACCGAAAGATAATTTAAACGTACCCCAAATTGTGCCTCCTTACTCACCACAGTTTAACTTTTATCCCAAGCTTGAAAATACTTCAACTCCACAAAAAAGTTTacctaaaattaatgtaaaaaatatagaatCGCTGATAACGCCAGAGCAAGAAGCCAACGAAGATTTGAATAATTCGGATTGTGAGTCGATGGACTGCGATGATCAACCTATGAATTTAGTTTTAGATTTAAGTAAGAAGAAATCAGAACCAATACGCACCCATCACGAAGTTCAAAAAGTCTCGCCCGTAATGGATCATCCTCAAGATTTGTCAAAGCGAAGCACCGAAATTCCGATGCCAACccaaaatgatattttaactcaaaatcttttaaaaagtaCAGCAAAATTGGATCCAGCTGCGTTATATGCTTCTCAATTAGCTTTATATAGAAACGGATTTCCTCCTTTGCATTCCTTACACACTTGGCCTTTTTCACTGAATCCTTTATTATTCCAATCAATGTCATCGCCACTTTTAACCCAGGATCCTCAAGAAATCAAAGAACGATTACAACGTTTACAACTGTGCGGAGGTGGTATGATTATGGATAATTTCGCtgaacgatttaaaaattatcaccaTTCTATCAATAATGCGAGCTTGAATCCATTcaataattacaaagtaaacGAAGTTCAACAAACTATGCAcgattcaaattatttacatagATCAGCCAAACCCGACGACGGTGTTCCTTTATCCTTATCAGTTGATCAAAATCTAGCAGAAAACATGGTTTCAATGCACAGTCCTGGCCAAACACCAAAGGCAGAATCGATTACAGCTTCGAGTTCGgtaaaaatgattattaaaaatggTGTTTTGATGCCCAAACAAAAACAAAGGCGATACAGAACCGAAAGACCATTTTCGTGTGAGTATTGTTCAGCTAAATTTACACTTCGCTCCAATATGGAACGCCATATCAAGCAGCAGCATCCACAATTTTGGCAACAACGACATAAAGCAAGTATGGGCGCCGGCCGAAAGCCACAATCGAGCAGttcaaatcaaaaacaaaatttttgtaatataaacatTCCTAATTATGACACACAAAGAAAACAAGAATATGACGAATCAAAAGATAATCAAATAagtgacaaaattaaatatgcaaTCCTTGCCCAACAATTGAAAGATTCGCACGATTATAAAACAACCAGCAAAGGTGatagtaaaattaaagaagaagaggATGAAGTACCGTTAATAATTGATGAACCTCACGAAAATGCCAATAAAATTGACGAAGGTGTCGATCGCAGGATAAACGATCATTTTTCCGACAAAAGCAAGCAGTACGCCGATATGCACGCTTCCAACACTCTCAATTTTAATTCCATAAAAAATGAAGAAACCCAAGATTTAGTACCGGTTGCTCGTTTGTTGGACAACGCTTCACAACAACcgtttaagaaatattttcataGAGAAGCAGATGGACGCGAAGGGGGTGTTAgtgaagaagatgaagaaggATTAGTTGCAAGTGGCAGCACTAGCGAAGAAAATAATTCCGGAACGGATGAAAATAGatCCGAATCGGAAAACGCTGTTTTGCCTACACCTGTAAAAAAGAAGTCTGCGTATTCTTTGGCTCCAAATCGCGTTACTTGTCCTTATTGTAAACGTAAATTTCCTTGGACGTCATCGTTGCGAAGACACATATTAACACACACTGGACAAAAGCCATACAAGTGCAGTCATTGTTCTTTGTTGTTTACAACCAAATCGAATTGCGACCGTCACCTTCTTCGAAAACATGGAAATGCGGCTAGCGTTATAAATACCAATGATCATTCCACCGGTTCAACAAATTTCATGATGCGAAATGTTCCCGATAGACCCTACAAGTGCCCTACTTGTCCCAGTAGCACATTCGcaacaaattctaatttaaggAAACATATGAGTACAAAGCATTCGTTACCAGGTGTACCGAGTGATGATGCACAAGTTTCTCCTGGATACGAAGCTGGAAGTTCTGAAGACGAAAAAGTATCTCAAAGTGAAAGAAAAAGTGAGTGGGAAAAGCAATTATTACCGAATAGCAAATCACTTCCATATTCTAACGCCGATCCTCAAAATATGCATTTGCAAAATTCCGACTTGCCATTTAAATGTCACTTGTGTGATAATTCATTTGGGGAACGACACGATGCTCTGGATCATATCAAAGATAAACATAATTCCGAATATGAACTTCTATTGTCTAAAAATGCATTGGATGTAAATGCCACCACTCCAGATGAAAATCCTCACCACGACGAAAATGAAGAAAGCGAAGTCCGTGGAAAATTTCCTGATTACGCAAATAGAAAGGTTATTTGCGCATTTTGTATGCGCCGATTTTGGTCCGCAGAAGATTTAAGAAGGCACATGAGGACGCATACCGGTGAGAGGCCATTCAGTTGCGATGTTTGCCATCGtcgttttactttaaaacataGCATGCTGAGACATAGAAAGAAACACAACTTGCAGTCAGAAAACGACCAAATCAACAGTGATGAAGATAATTGTGCAAATTTAAGTTCATCATATAAGGCGAATAATAACAATATGGAAAGAAAAACTGATGAGTCTGATGGCACCGAAAGTGACTTAATCAGCAACTTGTTGGGAATTCGCGATCGTTCCATCATAGAACAAGTTTTAACTTCTTCTGCCGATGATGCAGCCAAATTATTAGGTGTTAAAAGTGGAGAATCGGAATAA
- Protein Sequence
- MSKKRNCTNMDENKNNKRTKLQESSYDSSQTYACPVCRRDDFTSTDILEIHLEDNHPDFPAKCNICNKSFKNLKVLREHKFNMHTKNGSKHQKNSVLGFQDLTFVDFSSQKFPYIAKYECEKNLHKPASAPKFQCNKCSRAFPCSMSLEIHVPDCTANLQSKLQNSEDGREDQILKYNTNILPPSDTKDLADIQSIISITTNGSLLHQLQSNPNELNSIKQESELDTSRNENDEESQDIFATEFRKMKIRGEFPCRLCRAVFPNLRALKGHNRSHLNGNNNGMYLCNMCPHSSLDKAALIRHMRTHNGDRPYECSLCKYAFTTKANCERHLKNRHAKNTREEVKKAIIYHPSEDPSNEEISKMLSHEETNKALLLSNTHKNVNKPTEKAKIMTPNITNLLVTSPTKNPISSENISNFNIEANISRCYSGNEIPPKDNLNVPQIVPPYSPQFNFYPKLENTSTPQKSLPKINVKNIESLITPEQEANEDLNNSDCESMDCDDQPMNLVLDLSKKKSEPIRTHHEVQKVSPVMDHPQDLSKRSTEIPMPTQNDILTQNLLKSTAKLDPAALYASQLALYRNGFPPLHSLHTWPFSLNPLLFQSMSSPLLTQDPQEIKERLQRLQLCGGGMIMDNFAERFKNYHHSINNASLNPFNNYKVNEVQQTMHDSNYLHRSAKPDDGVPLSLSVDQNLAENMVSMHSPGQTPKAESITASSSVKMIIKNGVLMPKQKQRRYRTERPFSCEYCSAKFTLRSNMERHIKQQHPQFWQQRHKASMGAGRKPQSSSSNQKQNFCNINIPNYDTQRKQEYDESKDNQISDKIKYAILAQQLKDSHDYKTTSKGDSKIKEEEDEVPLIIDEPHENANKIDEGVDRRINDHFSDKSKQYADMHASNTLNFNSIKNEETQDLVPVARLLDNASQQPFKKYFHREADGREGGVSEEDEEGLVASGSTSEENNSGTDENRSESENAVLPTPVKKKSAYSLAPNRVTCPYCKRKFPWTSSLRRHILTHTGQKPYKCSHCSLLFTTKSNCDRHLLRKHGNAASVINTNDHSTGSTNFMMRNVPDRPYKCPTCPSSTFATNSNLRKHMSTKHSLPGVPSDDAQVSPGYEAGSSEDEKVSQSERKSEWEKQLLPNSKSLPYSNADPQNMHLQNSDLPFKCHLCDNSFGERHDALDHIKDKHNSEYELLLSKNALDVNATTPDENPHHDENEESEVRGKFPDYANRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDVCHRRFTLKHSMLRHRKKHNLQSENDQINSDEDNCANLSSSYKANNNNMERKTDESDGTESDLISNLLGIRDRSIIEQVLTSSADDAAKLLGVKSGESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271811;
- 90% Identity
- iTF_00273069;
- 80% Identity
- -