Lyun022108.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- -
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000052.1:4951646-4953206[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00092 0.097 14.4 1.5 1 23 110 132 110 133 0.95 2 11 0.013 1.4 10.7 4.2 2 23 141 163 140 163 0.92 3 11 0.00023 0.025 16.2 1.1 2 23 234 256 233 256 0.96 4 11 1.5e-05 0.0016 19.9 0.7 1 23 262 284 262 284 0.98 5 11 0.0014 0.15 13.7 0.4 3 23 292 312 291 312 0.96 6 11 1.5e-05 0.0016 19.9 3.2 1 20 318 337 318 341 0.95 7 11 7e-05 0.0074 17.9 0.8 1 23 349 371 349 371 0.96 8 11 0.00046 0.049 15.3 3.4 1 23 377 399 377 399 0.97 9 11 0.00098 0.1 14.3 1.0 1 23 405 428 405 428 0.97 10 11 1.3e-05 0.0013 20.2 2.5 1 23 442 464 442 464 0.98 11 11 2.1e-05 0.0022 19.5 0.4 1 23 470 493 470 493 0.97
Sequence Information
- Coding Sequence
- ATGTCTTGCTTCATTTGCTTCGTTAAATGTTCGAATTTAATAAACACGCAAGACACAGACTTGGAGAACTTAAAATGGAGCAGCAAACTTGGGCTCTGCATACCCGAAATGgATTGTTGCGACGATCAATTCCTGTGCGGTTTATGCATTCAACAATTGGAAACCACCTGGATCTTTCGTAAACTGTGTCTGCAATCAAAGGACCAACGCGAGCGAATACAGCTAAACGAAGCTTTACAAAAAGAATCGTGGAATGATCCTCCTTCCAGTTTACATGAACATACAAATTATGAGCTCGATAAGGAAGTCGATTCGAAACAAGAAACCTTTTCGTGTTTCTATTGTAACGAAATGTTAACCGATAGAACAGCTCTGATAAACCACATTACTTCACATCACAATGAAAAAACCACCACAAAAAAGTGTCATTTATGTTCGAAACCGTGTTCCAACCAGCGGGCGTTATTGAATCATTTGTACGAGCAGCACAACGAAGAAACTGACAGTTCCAAACGCTATGAATGCGACAAATGTTTACAACTGTTTGACGGGCTAGAACTTAAAGTTCATATTGACAATTGCCAAAATTTACCACCGCCAGTGGAAAAAGTAAAGAAGAAAGAGATTGAAGTTCCCGAACAAGGTGAGAAGAAACGAAGAGGACGTAAAAAATCAGAAGAGCTGTCTGAGCTTTCTAAGGTATGTCACATATGCGGTGTTCTCTTTACCAGTCGATACATGGCCACGAGACACATGCGTAACGTTCATGCAACCGAAAAGAAGTTCGAATGCGAAATTTGTAaccaaaaatttgtaagttcGGTTTATTTGAACGCTCACAAACGTTACCACTCGCGCGAAAGACCCAACATATGTGCATTTTGTGGTAAGGGATTTATAACCGGTAGTGATTTGTACCACCATGAAAAAATTCATGCGAATAAGCGCGAGTACAAGTGCGAAAAGTGTCCGAAGGCTTTTAACACCTCCTCGGACTTATTTAAACACCGATTGTGTGTACACCAAGACAGaaacaattggaaatatttgtGTACTTTTTGTGATCGTCGTTTTCCGTTAAAAACGAATTTAGACGCTCACATAAAAACGCACACAGGGGAACGGAACTTTGCGTGCCATTTGTGCGATCGTAAGTGTGTGAACCGCTCGGTTCTCTTACGTCACATAAATTCTCACTCTAATGTGCGTTTGTTTAAGTGTAACATTTGTAATGGCGAGTACAAATATGAGAAGTCACTAAACTTACACATGACTAAGGTCCACGGGATCGGTGATGCGAAAATTCCGGTACGAACAAAAAAGTTCTTCTGTCATATTTGTCCGAAATCGTATATAGCAAACAACAAGTTGCAAAAACACATTAGGACGCATACGGGCGAGAGGCCATTTGCATGTGAAATGTGCGATAAACGGTTTATCGATAAGGCGTACATAAAGCAACATCTTAAAACTGCTCACAATGTGGTTGTTGATAACACAAACTAA
- Protein Sequence
- MSCFICFVKCSNLINTQDTDLENLKWSSKLGLCIPEMDCCDDQFLCGLCIQQLETTWIFRKLCLQSKDQRERIQLNEALQKESWNDPPSSLHEHTNYELDKEVDSKQETFSCFYCNEMLTDRTALINHITSHHNEKTTTKKCHLCSKPCSNQRALLNHLYEQHNEETDSSKRYECDKCLQLFDGLELKVHIDNCQNLPPPVEKVKKKEIEVPEQGEKKRRGRKKSEELSELSKVCHICGVLFTSRYMATRHMRNVHATEKKFECEICNQKFVSSVYLNAHKRYHSRERPNICAFCGKGFITGSDLYHHEKIHANKREYKCEKCPKAFNTSSDLFKHRLCVHQDRNNWKYLCTFCDRRFPLKTNLDAHIKTHTGERNFACHLCDRKCVNRSVLLRHINSHSNVRLFKCNICNGEYKYEKSLNLHMTKVHGIGDAKIPVRTKKFFCHICPKSYIANNKLQKHIRTHTGERPFACEMCDKRFIDKAYIKQHLKTAHNVVVDNTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294216;
- 90% Identity
- iTF_00268949;
- 80% Identity
- -