Cfla023347.1
Basic Information
- Insect
- Cantharis flavilabris
- Gene Symbol
- -
- Assembly
- GCA_949152465.1
- Location
- OX424438.1:9123030-9124571[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0021 0.13 13.8 1.2 1 23 105 127 105 128 0.95 2 12 0.02 1.3 10.7 4.2 2 23 136 158 135 158 0.92 3 12 0.42 27 6.6 0.1 1 20 168 186 168 188 0.94 4 12 0.00036 0.023 16.2 1.1 2 23 229 251 228 251 0.96 5 12 2.3e-05 0.0015 20.0 0.7 1 23 257 279 257 279 0.98 6 12 0.0022 0.14 13.8 0.4 3 23 287 307 286 307 0.96 7 12 2.3e-05 0.0015 20.0 3.2 1 20 313 332 313 336 0.95 8 12 0.00011 0.0068 17.9 0.8 1 23 344 366 344 366 0.96 9 12 0.0007 0.045 15.3 3.4 1 23 372 394 372 394 0.97 10 12 0.0015 0.095 14.3 1.0 1 23 400 423 400 423 0.97 11 12 1.9e-05 0.0012 20.2 2.5 1 23 437 459 437 459 0.98 12 12 1e-05 0.00065 21.1 0.7 1 23 465 488 465 488 0.97
Sequence Information
- Coding Sequence
- ATGTCCTGCTATATTTGCTTCGTTAAatgttcaaatttaataaacacgCAAGACACAGACGTGGAAAACCTAAAATGGAGCAGCAAACTCAGCTTTTGCATACCCGAAATggATTGTTGCGAGGATCAACTCCTGTGCGGTTTATGCATTCAACAATTGGAAACCACTTGGCTCTTTCGTAAACTGTGTTTGCAGTCGAAAGACCAACGAGAGCGGTTACAGCTCGACGAAACTTTACAAAAAGAATCGTGGGACGATGCTCCTTCCAGTTTACATGAGCACAAAAAGGAAGTCGATTTAAAACAAGAAACCTTTTCGTGTTTTTACTGTAACGAAATATTAACCGATAGAACCGCACTGATAAACCACATTACATCGCATCACAATGAAAAGACCACCACAAAGAAGTGTCATTTATGTTCCAAACCATGTTCGAACCAACGAGCGTTGTTGAATCATTTATACGAACAACACAACAAAGAAACTGACACTTCGAAGCGCTACGAATGTGATAAATGTTTAAAACTATTTGATGCGATACAACTAAAACTTCACATTGAAAATTGTCGAAATTTACCACCATCAACAGACGTGGAGATAAAAGACGATATTGAAATCCCCGAGCAGGTTGAGAAGAAACGAAGGGGACGAAAAAAATCGGAAGAGCTATCCGAGCTCTCTAAGGTATGTCACATATGCGGTGTCCTCTTTACCAGTCGATACATGGCTACGAGACACATGCGTAACGTTCATGCAACTGAAAAGAAGTTTGAGTGCGaaatttgtaatcaaaaatttgtGAGTTCAGTTTACCTGAATGCTCACAAACGATATCACTCGCGCGAAAGACCTAACATATGCGCGTTTTGCGGTAAGGGATTTATAACCGGTAGTGATTTGTACCACCACGAAAAAATTCACGCCAACAAACGGGAGTACAAGTGCGAAAAGTGTCCAAAAGCTTTTAACACGTCCTCAGACTTGTTTAAGCACCGATTGTGTGTGCACCAAGACAGaaataattggaaatatttGTGTACGTTTTGTGATCGTCGTTTTCCTTTAAAAACGAATTTGGACGCTCATATAAAAACGCATACAGGTGAACGTAATTTTGCATGTCATTTGTGCGATCGGAAGTGTGTAAACCGCTCGGTCCTCTTACGTCACATAAATTCTCATTCGAACGTGCGTTTgtttaaatgtaacatttgtAATGGCGAGTACAAGTATGAGAAGTCTTTGAACTTACACATGACTAAGGTGCACGGGATTGGTGATGCGAAAATTCCGGTACGAACGAAAAAGTTCTTTTGTCATATTTGTCCCAAATCGTACATAGCAAACAATAAGTTACAGAAACATATCAGGACGCATACGGGTGAGAGGCCGTTTGCTTGTGAAATGTGCGATAAAAGGTTTATTGATAAATCGTACATAAAGCAACATCTTAAAACTGCTCATAATGTGGTTGTTGATAGCACAAACTGA
- Protein Sequence
- MSCYICFVKCSNLINTQDTDVENLKWSSKLSFCIPEMDCCEDQLLCGLCIQQLETTWLFRKLCLQSKDQRERLQLDETLQKESWDDAPSSLHEHKKEVDLKQETFSCFYCNEILTDRTALINHITSHHNEKTTTKKCHLCSKPCSNQRALLNHLYEQHNKETDTSKRYECDKCLKLFDAIQLKLHIENCRNLPPSTDVEIKDDIEIPEQVEKKRRGRKKSEELSELSKVCHICGVLFTSRYMATRHMRNVHATEKKFECEICNQKFVSSVYLNAHKRYHSRERPNICAFCGKGFITGSDLYHHEKIHANKREYKCEKCPKAFNTSSDLFKHRLCVHQDRNNWKYLCTFCDRRFPLKTNLDAHIKTHTGERNFACHLCDRKCVNRSVLLRHINSHSNVRLFKCNICNGEYKYEKSLNLHMTKVHGIGDAKIPVRTKKFFCHICPKSYIANNKLQKHIRTHTGERPFACEMCDKRFIDKSYIKQHLKTAHNVVVDSTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294216;
- 90% Identity
- iTF_00271678; iTF_00273023; iTF_00270282; iTF_00928002;
- 80% Identity
- -