Lyun007070.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lycocerus yunnanus
Gene Symbol
PAXBP1
Assembly
GCA_036346125.1
Location
JARFIX010000012.1:3651947-3654313[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.8e-30 1.9e-25 91.3 0.1 3 272 508 715 506 717 0.92

Sequence Information

Coding Sequence
ATGTCTCTGTTTAAAAAACCAAGAAAGTCTATACAACGACGCGTTTTCACCGAgaacgacgacgacgacgaacAACCGGTAACTAGAACTGAAAGCGTTTCGTATGAAAAAGAAGCAAAGAAAAAGGACAAGTCGAAAAATGTTCAGAAAAAGCAGTCGTTGCTTAGTTTCGAGACCGAGGAGGAAGGCGAAGTTTTTCAAGTAAAAAAGTCTTCTCACAGTAAACGCATGATGCGTTTGTACGAGAAGGAACGTCAAAAAAAGGAGCCCAAGGCGGAAAAGTTGGACAAAGAAGTTTCTAAACCGAAAGATTCCATCACTCAAATTGTTACGGACGATTTTGTGGTGAAAGTCAACGCAAGTCATAAGGTAACTCCTCCACCTCCACCTATATTAAGTGGAAGAGCCGCTCTCTGTGCCGGAAGAGATGACATGTCCGATGAAGAGGAGGAAGATAGTGGCGGCGATTCTCATAGATTTTCTAAACCTGAACGcgttaaaattatattggaaTCGGGCGTTATTCCCGACGCTGCCATGATTCATGCGGCCAGGAAGCGGAGGCAAAAAGCTAGAGAATTAGGAAACGAATATATTCCGGTGGACGATGAGGAAGCTGAAGATGGGGGTCGAATGCGGCAGGAAGACGATCAAGACGAAGCAAGTGACGAGGAACGTATCGATATGGATGCAAATCCCGTAATTCGTGATCAAGAAAGGCGAAGAGAACAATTTTTAGCTGCACAAGAATCCGAACAAGAAGACGATTTAGAATTGGACGAATGGGAGAATCAACAAATTAGAAAAGGTGTTACAGGTGCTTGTCCGGTCAATATTCAACTCGAGTATACGTACGAAGATTACGGGAGTGTTACAACTCAGCCTCAACCTGCGCCTCCTGCAATTGATCTAAATACTCAGTGCACACCTCAAACTATAGTTGCTaaacttgaagaaaaatttgaggCGGTTTGTGTTTCTCGTGATTCACACGAAAAGCATTTGCAGCAAGTACAAAAGGATTTGGTTCGAACAAACGAAGAATTGGAAGATTTGAAAAGTCGAGCTCCAAAAGCCGCCGAACGATTTAGGTTTTATCAGGAATTGCGCGGATACATTACAGACTTGGTGGAATGTTTGGACGAGAAGGTGGGAGTTATCAGCGATTTGGAAACTCGTGCTTTAACTTTAATGGCGAATAAGGCGGAATGGCTTATCGAACGTCGACGTCAAGATGTTCGAGATCAAGCCGACGAAGTTACTAATTTGGCGAAGGGCGTCGTCCGTCGTGGTATAGAAGACGAAGAAAAGGTAAGGCGCGCCGCAGAACGAGAGGGACGACGCTCTAGACGGCGCAGAGCGAGAGAACAACAAAGACAGCCTCGTCACGTGGAAGGTATGTCTAGCGATGATGAGATTATGCAACaagatttgttaaattttgataagGAACGGGAGCTAATCGAAGGTGAAGTGGAAAAGGTGTTTGAAGATGTCGTCGACGATTACTCATcaattacaaacattttaattcgATTTGAACAGTGGAGGGAGACCGATATGGGTACTTACACGGATGCTTACGCTACACTATGTTTGCCACGTGTGGTGGGTCCTTTATTAAGGTTACAACTTGTTTTTTGGGATCCTCTTGCAGATTCtgtagaaattgaaaaattggaatGGTATCGCACATTGGCACTGTACGGTTTGCACGATGACGAAACGGAAACCGATTTGAGTCGAGATCCAGATATTAATTTGTTACCTACGATtgtggaaaaaattataattccaaaattggaaaaattagtgGATCGATGTTGGGATCCGCTGTCCAGTTCGCAAACTTTACGCCTAGTGGGAATTCTAAGTCGCTATATAAGACGTTTTCCGACGTTGGGCCCAGCTAGCAAATCCTTACAGATTCTATTTAATGCCGTCTTGCATAAATTAAAAGGTGCACTCGAAAATGATGTGTTTATTCCCATAACGTTTAAGTTGTCTGAAAGTAAATCGTCCTTTTTTCAACGTCAATTTGCAAGTGGTTTAAAGTTGCTTCGTAATATTACTAGCTGGCAAGGGATACTAAACGATAAAACCTTGAAAGATTTAGCACTCCACGCTCTGCTCAATCGTTATCTTCTTAGTGCGGTGAAGGTTTGCCAAGTGACTGATGCAGTGTCAAAAGTTGGCTTAATAAGCCACATTTTACCGAGGATTTGGCTTCAGGGAAATATTCCTCAATTACAAATGTTTAGCACTTGCGTCACAAATTTAGCTCAGCAACTCGACAAGGAAAATCCTCTACATTTGGAATCCATCGAAACTCTGTCGAATGTTTTAAAATCACTCAAAAGTAATTGA
Protein Sequence
MSLFKKPRKSIQRRVFTENDDDDEQPVTRTESVSYEKEAKKKDKSKNVQKKQSLLSFETEEEGEVFQVKKSSHSKRMMRLYEKERQKKEPKAEKLDKEVSKPKDSITQIVTDDFVVKVNASHKVTPPPPPILSGRAALCAGRDDMSDEEEEDSGGDSHRFSKPERVKIILESGVIPDAAMIHAARKRRQKARELGNEYIPVDDEEAEDGGRMRQEDDQDEASDEERIDMDANPVIRDQERRREQFLAAQESEQEDDLELDEWENQQIRKGVTGACPVNIQLEYTYEDYGSVTTQPQPAPPAIDLNTQCTPQTIVAKLEEKFEAVCVSRDSHEKHLQQVQKDLVRTNEELEDLKSRAPKAAERFRFYQELRGYITDLVECLDEKVGVISDLETRALTLMANKAEWLIERRRQDVRDQADEVTNLAKGVVRRGIEDEEKVRRAAEREGRRSRRRRAREQQRQPRHVEGMSSDDEIMQQDLLNFDKERELIEGEVEKVFEDVVDDYSSITNILIRFEQWRETDMGTYTDAYATLCLPRVVGPLLRLQLVFWDPLADSVEIEKLEWYRTLALYGLHDDETETDLSRDPDINLLPTIVEKIIIPKLEKLVDRCWDPLSSSQTLRLVGILSRYIRRFPTLGPASKSLQILFNAVLHKLKGALENDVFIPITFKLSESKSSFFQRQFASGLKLLRNITSWQGILNDKTLKDLALHALLNRYLLSAVKVCQVTDAVSKVGLISHILPRIWLQGNIPQLQMFSTCVTNLAQQLDKENPLHLESIETLSNVLKSLKSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00949876;
90% Identity
iTF_01291565; iTF_00268264; iTF_00269802; iTF_00272527; iTF_00271152; iTF_01293687;
80% Identity
-