Lhir004601.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- nfxl1
- Assembly
- GCA_947563715.1
- Location
- OX387383.1:24537793-24540267[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2 2.8e+04 -7.8 5.6 15 19 135 139 134 139 0.81 2 17 0.01 1.5e+02 3.2 0.3 4 10 170 176 169 177 0.97 3 17 3.1e-07 0.0044 17.6 15.9 3 19 187 203 186 203 0.95 4 17 1.3e-08 0.00018 22.1 13.1 3 19 240 256 238 256 0.91 5 17 1.7 2.4e+04 -3.9 1.9 6 10 281 285 280 285 0.83 6 17 1.5e-08 0.00021 21.9 14.8 1 19 291 309 291 309 0.99 7 17 1.4e-06 0.02 15.5 19.4 3 19 346 362 338 362 0.86 8 17 6e-06 0.085 13.5 18.3 1 18 396 413 396 414 0.97 9 17 4.5e-10 6.3e-06 26.7 14.0 1 19 423 441 423 441 0.99 10 17 0.0002 2.9 8.6 6.4 9 19 489 499 487 499 0.89 11 17 0.15 2.2e+03 -0.6 6.7 3 12 510 519 509 519 0.89 12 17 0.35 4.9e+03 -1.7 3.6 14 18 548 552 548 553 0.87 13 17 0.1 1.4e+03 0.0 0.5 7 12 568 573 568 580 0.82 14 17 1.9e-05 0.27 11.9 5.1 1 11 589 599 589 600 0.97 15 17 0.69 9.9e+03 -2.6 1.0 15 18 614 617 613 618 0.86 16 17 0.0015 21 5.9 14.6 3 18 630 646 629 647 0.87 17 17 2.4e-06 0.035 14.8 12.9 1 16 688 702 688 707 0.90
Sequence Information
- Coding Sequence
- ATGGCGCGACGGTACCGTGATGCAGCAGCAAAACTGCAGATGAATGTCCAAAAACATCTGAAAGAAATGAAGGATCACCTCTCTTCTTCGGAAGACGAGGAGCCTTATGAGCCAAGCGTTCTAGACGGAGTGTTTCAGAGCTATTGGCGAGGCGGAGGAGATACTCAAATGCTGAATAGAACCAAGAATCTTCTAGAAGAAGCGCTTAGCGGCCGCTCCGTGACTTGTCTCATTTGCATCGCTTCTATCAAAAGAAACCACGCCATCTGGACCTGTGACCATTGCTACTCTTACTTCCATCTGTCCTGCATACAAAAGTGGGCAAACGACAGCATCAGTTTGCGCAGCGAGGAAAATCAAGGCCCCATAACAGTATTTATGCCGAAAAAAATTGAATGGTGTTGTCCCAAATGTCGCCAAGTGTACAGCAAGGAGCAAATACCTCGTAAATACAGATGCTTCTGTGGCAAAACTGATGATCCTCCACAGCACCCATGGCAAATCCCACATACTTGTGGAGAAGTCTGCGGAAAGAGGTTGTCTATGGGAGACAACTGTAAACACAAGTGTCTACTCCTCTGTCATCCGGGGCCCTGCCCACCATGCCCTCAAACAGTCAATGGGATATGCTACTGCCAAAAAGAACACAAGAAAGTTAGATGTAGCTCGGCTAAGTGGTCTTGTGGACAGCAATGCAAGAAAACTCTTCTCTGTCAAACTCATAAATGTGAAAATATATGCCATGATGGTGACTGCCCTCCTTGCAGCTACACTAGCATACAGCCATGCCAGTGCGGGCATGAAAAATCTAAACAACCATGTAACAACCCATTCTGGCAGTGTAAGAAGCCATGTAAAAAGCCTTTTGACTGTGGCTATCATAAATGTGAGAAGATCTGCCACTCAGGCAGCTGTCATACATGTCCTAACTCAGGCATGCGTTCCTGTCCATGTGGAGCTAATCAACGTTTTGTCCAATGTCCTGATGTGATGGAAACATGCCTCGGAACTTGTGGGAAAAGGCATGACAATTGTGAACATACTTGCCCAGAAAAATGCCACAAAGGCCAGTGCCCACCTTGCCAAGTCCTGATACAGAAGAAATGCTTTTGCTCAACACATACTAGATCCCTGCCATGTAGTAAAGAATTTAAGTGTGACACCAAATGCCGAGGCACCAGACCTTGTGGAAAACATGGATGTGCCCGTAAATGTTGCAATGGCAACTGTCCTCCGTGTGAGAAGACTTGTGACAAACCATTACAATGTGGTCGTCATAAATGCACCAACATCTGCCACCGTGGTCCATGTTACCCTTGTCCACTAGAGTCCAAAGTTACCTGCAAATGTAAAGAAACATATCTAACTGTCCCGTGTGGAAGGGAGAAGCATGTTAAACCACCCAAATGCATACTGCCTTGTAAAGTCAAATACAGATGTGGTCATTTAGAAGAGAACAAACATTCCTGTCATTTTGGAGACTGCCCTCCATGCAAAGCTATCTGTAACAAAACATACCCAAAATGTGAACATGAATGTGTATCTATATGTCATGAATATGTAGCTGTAGTATTCAAGCAGGTGGAAAAGCCGGCAACACCATGGGAAGTTCAACCTCCAAAGACCAAAATCATGACTTTAGATTGCCCACCATGCGATGTTCCCGTTTCTATCATATGTTTTGGAGAACATGAGACAGAAGAACAGCCATGTCATAAAGCAGCACGAAGACCATGCGGCCGAGAGTGTGGTAAACCATTGACTTGTGGGAATCATAACTGTACTTTACTCTGTCATCTCTTCACTTCTGATTCTCTGTATCCACATGTGGCTTACTTATGTAAGCCTTGTGATAGAGGCTGTGAGAAACCCCGTCCAGAAAAATGCACTCACAAATGTGCAAAAGGAGCCTGCCATCCAGGACAGTGCCCATCGTGTGAAGTCTATGAACGTATAGCTTGTCACTGCGGCACGGCAGAGCTCTATCTCCGCTGCCGTGAACTCAGTACAGCTACAGAAGAAATGCTGTCATGCAAGCAGCAATGCCCAAAGAATTTAGAATGCGGTCACCGGTGCCGAAATACTTGCCATTCAGGTCCTTGTGGTAACCAAATTTGTACGAAGAAAACTAAGATTCACTGCATATGTGGCAATTTGAAAAAAGATGCACCATGCAATGCTGTTAGAAGTGGAGAAGCCAAACTTTTATGTGATGAATCATGTGAAAAAAAGAAGGTGGCTGCGAAAATTGAACAAGACAAAGAGCAACAGAGACTTAAACAGCTAGAGGAAGAAAGGAATAAGAAGGAGCTAGCTGAATATGAGTGGAAACTCAGTGGGAAGAAGAAGAAATACAAGGAGAAGAAGGTTATTATCAATAAGGATGATAGGAACTGGTTGCAGAAATACTGGATACCCATTCTCTCCATGTTGGTTGTAATATTAGCAGCAGCATATTACATATTTTATCTGTAA
- Protein Sequence
- MARRYRDAAAKLQMNVQKHLKEMKDHLSSSEDEEPYEPSVLDGVFQSYWRGGGDTQMLNRTKNLLEEALSGRSVTCLICIASIKRNHAIWTCDHCYSYFHLSCIQKWANDSISLRSEENQGPITVFMPKKIEWCCPKCRQVYSKEQIPRKYRCFCGKTDDPPQHPWQIPHTCGEVCGKRLSMGDNCKHKCLLLCHPGPCPPCPQTVNGICYCQKEHKKVRCSSAKWSCGQQCKKTLLCQTHKCENICHDGDCPPCSYTSIQPCQCGHEKSKQPCNNPFWQCKKPCKKPFDCGYHKCEKICHSGSCHTCPNSGMRSCPCGANQRFVQCPDVMETCLGTCGKRHDNCEHTCPEKCHKGQCPPCQVLIQKKCFCSTHTRSLPCSKEFKCDTKCRGTRPCGKHGCARKCCNGNCPPCEKTCDKPLQCGRHKCTNICHRGPCYPCPLESKVTCKCKETYLTVPCGREKHVKPPKCILPCKVKYRCGHLEENKHSCHFGDCPPCKAICNKTYPKCEHECVSICHEYVAVVFKQVEKPATPWEVQPPKTKIMTLDCPPCDVPVSIICFGEHETEEQPCHKAARRPCGRECGKPLTCGNHNCTLLCHLFTSDSLYPHVAYLCKPCDRGCEKPRPEKCTHKCAKGACHPGQCPSCEVYERIACHCGTAELYLRCRELSTATEEMLSCKQQCPKNLECGHRCRNTCHSGPCGNQICTKKTKIHCICGNLKKDAPCNAVRSGEAKLLCDESCEKKKVAAKIEQDKEQQRLKQLEEERNKKELAEYEWKLSGKKKKYKEKKVIINKDDRNWLQKYWIPILSMLVVILAAAYYIFYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01172943;
- 90% Identity
- -
- 80% Identity
- -