Basic Information

Insect: Lycia hirtaria
Gene Symbol: -
Assembly: GCA_947563715.1
Location: OX387384.1:24466173-24495265[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 3.4e-05 0.0028 18.7 2.2 1 23 420 442 420 442 0.97

2 20 0.0018 0.14 13.3 0.8 1 20 448 467 448 470 0.94

3 20 2.7e-05 0.0022 19.0 5.4 1 23 489 511 489 511 0.98

4 20 0.00012 0.0097 17.0 4.1 1 23 517 539 517 539 0.99

5 20 4.6e-05 0.0037 18.3 5.3 1 23 545 567 545 567 0.97

6 20 3.5e-06 0.00029 21.8 6.7 1 23 573 595 573 595 0.98

7 20 9.2e-07 7.4e-05 23.6 2.9 1 23 601 623 601 623 0.97

8 20 0.00013 0.01 16.9 6.7 1 23 629 651 629 651 0.97

9 20 0.00012 0.01 16.9 6.5 1 23 657 679 657 679 0.97

10 20 6e-07 4.9e-05 24.2 1.9 1 23 685 707 685 707 0.98

11 20 6.2e-05 0.0049 17.9 7.9 1 23 713 735 713 735 0.98

12 20 3.1e-05 0.0025 18.8 6.6 1 23 741 763 741 763 0.98

13 20 2.9e-05 0.0023 18.9 5.4 1 23 769 791 769 791 0.98

14 20 4.6e-05 0.0037 18.3 2.9 1 20 797 816 797 817 0.94

15 20 1.4e-05 0.0011 19.9 5.2 1 23 867 889 867 889 0.98

16 20 3.8e-06 0.0003 21.7 6.0 1 23 895 917 895 917 0.98

17 20 7.3e-05 0.0059 17.6 7.9 1 23 923 945 923 945 0.97

18 20 2.2e-05 0.0018 19.3 1.4 1 21 951 971 951 972 0.95

19 20 0.00041 0.033 15.3 0.3 1 23 1117 1139 1117 1139 0.97

20 20 0.033 2.7 9.3 5.4 1 23 1148 1170 1148 1170 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	3.4e-05	0.0028	18.7	2.2	1	23	420	442	420	442	0.97
2	20	0.0018	0.14	13.3	0.8	1	20	448	467	448	470	0.94
3	20	2.7e-05	0.0022	19.0	5.4	1	23	489	511	489	511	0.98
4	20	0.00012	0.0097	17.0	4.1	1	23	517	539	517	539	0.99
5	20	4.6e-05	0.0037	18.3	5.3	1	23	545	567	545	567	0.97
6	20	3.5e-06	0.00029	21.8	6.7	1	23	573	595	573	595	0.98
7	20	9.2e-07	7.4e-05	23.6	2.9	1	23	601	623	601	623	0.97
8	20	0.00013	0.01	16.9	6.7	1	23	629	651	629	651	0.97
9	20	0.00012	0.01	16.9	6.5	1	23	657	679	657	679	0.97
10	20	6e-07	4.9e-05	24.2	1.9	1	23	685	707	685	707	0.98
11	20	6.2e-05	0.0049	17.9	7.9	1	23	713	735	713	735	0.98
12	20	3.1e-05	0.0025	18.8	6.6	1	23	741	763	741	763	0.98
13	20	2.9e-05	0.0023	18.9	5.4	1	23	769	791	769	791	0.98
14	20	4.6e-05	0.0037	18.3	2.9	1	20	797	816	797	817	0.94
15	20	1.4e-05	0.0011	19.9	5.2	1	23	867	889	867	889	0.98
16	20	3.8e-06	0.0003	21.7	6.0	1	23	895	917	895	917	0.98
17	20	7.3e-05	0.0059	17.6	7.9	1	23	923	945	923	945	0.97
18	20	2.2e-05	0.0018	19.3	1.4	1	21	951	971	951	972	0.95
19	20	0.00041	0.033	15.3	0.3	1	23	1117	1139	1117	1139	0.97
20	20	0.033	2.7	9.3	5.4	1	23	1148	1170	1148	1170	0.99

Sequence Information

Coding Sequence: ATGAATCCGGATCATCACAATATCAACACGGGTGGTGGTCAACCCCCTGGGAGTTCAGAGTCTCAAGGGCAGCGAGTGCAGGCTGCACAGCAGCAACAACAGGGAAGCTTGCCCGCGACGACATCTGCCACAGATTTAAGAGTAAATACAGCAGCTGTGAATGTTGCTTTGTCCAGTGTAGCAAAGTATTGGGTATTTACGAACTTATTCCCTGGACCAATCCCACAAGTGTCTGTTTACGGATTACCTACTGGAACTAGAATTGAAAATGGAAAACCTGTTCAGGATCTTGGCCAACATGCTAGTATACTCAATGGTGATCCCAACATCATCCTAGGTCATCATGGTGGACAATCACAGGTTACAGTATCTGCAGGTGCACAGCAAATTCCTGTATCACAGATCATTGCCACACAGTCTGGGCAAGCACATGAAGCGCTAGTTGCACACAGTCAACACAGCCAGGAGTTGGTGCAACAGGCGGCAGGCTCCCAGGTTTCAGTCGCCGGACAGGCAACCCACCAGCAGGTACCCAATAACCGGGTCGAATTTGTACAACACCATAACATTGATATGGGGCATCACTCTCAACAACACATTCTGCAGCAACAGTTGATGACGGCCCGCCCCGACCACTCCAATCAGCAGATTCAGCTAACAGTCAGTGAAGATGGCATTGTGACTGTTGTTGAACCAGGGAGCAGTAAGTTGGTTGACAAAGAAGAACTGCATGAGACCATCAAACTGCCGTCTGATCATCCTTTGACCATCCACCAGTTGCAGCAAATTGTTGGGCAGCAGCTCGGTACGCAAGTTCTAGAAAACGTAGTGCGAATAGAGCAAGCGACGGGCGAGCCGGCCAACATTCTTGTCACGCACAACGCCGACGGGACAACTTCTATAGAAGCAAGCGCGTCCGATCCACTCGCCATCGTGAAAGATGAAAAAACACAAGGCAAGATGGAAACGGCTCAGTTTGCTATACCTGCTGAGATTAAGGACATTAAAGGCATTGACTTAAAGAGTGTAGGAGCAATGGGTATGGAGGGAGCAGTGGTAAAGATATCCACCACTGGGTCAGACCATGACATGACTGCCATGTACAAAGTCAATGTGGAAGACCTTTCACAGCTGCTTGCGTATCATGAAGTCTTTGGAAAACTCAACACAGATGGACAAACACAAAGCAAAGGTGAATTAGAGATAGAAGTGCCAGGGCCAAGCCAGATGTCAGAGGCAGAGTCTTCACCCGGACATCATTCCTGTGATATCTGTGGGAAAGTTTTCCAGTTCCGGTATCAACTTATTGTACACAGGCGATACCACGGTGAAAGCAAGCCTTACAGTTGCCAAGTATGTGGTTCGTCATTCGCTAATCCAGCCGAATTATCGCGCCATGGGAAATGCCATCTTGCCGGGGATCCAGTGGAGAGGCACGCCAAGCGGATACCCCAAGACAGGCCCTACGCTTGCTCTACATGCCATAAAACGTTCTCACGCAAAGAGCACCTCGACAACCACGTCAGGAGTCACACGGGAGAAACGCCCTACAGATGCGAGTTCTGCGCGAAAACATTCACCCGCAAAGAGCACATGGTGAACCACGTGAGGAAGCACACGGGCGAGACGCCGCATCGCTGTGATATCTGCAAGAAGAGCTTCACTAGGAAAGAACACTTTATGAACCACGTCATGTGGCACACAGGTGAAACACCACATCAATGCCAAACTTGCGGTAAGAAGTATACTAGAAAGGAACATCTGATGAACCATATGAGGTCTCATACGAATGATACGCCATTCCGATGCGACCTTTGCGGGAAATCTTTTACGAGAAAGGAACACTTCACCAATCACATTTTGTGGCATACTGGCGAAACCCCCCACAGATGCGACTTCTGTTCAAAAACTTTCACACGTAAGGAGCACTTACTAAACCACGTGAGACAGCACACGGGCGAGTCTCCGCACCGGTGCAACTTCTGTTCGAAATCGTTCACGAGACGCGAGCATCTCGTGAACCACGTCCGACAACACACAGGGGAAACCCCGTTCCAGTGTGGGTACTGCCCTAAGGCGTTCACGAGGAAGGACCATCTCGTGAACCATGTCCGTCAACACACTGGTGAATCCCCTCACAAATGTTCGTTCTGTACGAAATCGTTCACCCGCAAGGAGCACCTGACGAACCACGTGCGGCAACATACGGGCGAGTCACCGCACCGATGCACTTACTGCGCGAAATCATTTACCAGGAAGGAGCATCTCACCAACCACGTCAGACAGCACACGGGCGAAACGCCACACAAGTGCACGTTCTGCCCGCGCGCGTTCTCGCGGAAGGAACACCTCAACAACCACGTCCGGCAGCACACCGGCATCACGCCTCACTCCTGCTCCTACTGTAACAAGAGCTTCACCAGGAAGGAGCACCTCGTCAATCACGTCAGTGACGAAGATCCTGATTCTGATCATTCTGAAGATGCTGATGTGTTAGATGATGTGCCGGAATTGGCAGAACAACAATCACCTATGGTTCCTGGAGACGCACCTTCTTGCAGTGATGATATGCAGAGGCAACACACCGGCGAGACGCCGTTCAAGTGCACGTTTTGTTCGAAGTCGTTCTCGCGCAAGGAGCACCTCACGAACCACGTGAACCTGCACACCGGCGAGACGCCGCACAAGTGCCCCTTCTGCACCAAGACATTCTCCAGGAAGGAACATCTCACCAATCACGTCAGGATCCACACGGGTGAATCTCCACACCGATGCGACTTCTGCCAGAAGACGTTTACCCGCAAGGAACACCTCACGAACCATCTGAAGCAGCACACGGGTGACGCCGCGCACACTTGCAAGGTTTGCTCCAAGCCGTTCACGAGGAAGGAGCATTTGGTAACACATATGAGCGTCAGTTCTGCGGTGGCGGAGCATGCTTTGACCTCCGACACGCAGCACTACATTAGATTCGATAAGGTGAAGGTCCTGGCACGTGAGAAGTTGTTTGTGCCCCGGAAGGTCAGGGAGGCTATAGAAATTAGTAAACGACCGACCTTTAACAGAGATGGGGGATGGCACTTACCACCCACTTGGAAACCTTGCCTTCATGGAGCTCGGGAGGATGATCGTGAGTCTGGTGGTGATATTGTGAGTTCCGCTTGCTGGAACATTCCTGACACTCACGAGAGTTCTAGTGAAGAGGACACTTCAGCTGAACCGACGCAAGACGACCAGCTTCCCGCCCTAACCCTTTTGCAACCGATGACATCACGTGCGGCACGAGCGGCACGTCGCAGTGCTAGGCGCGTCACCGACCGAGAATCTCACAGTTGCGGCGAGAAGCCGTACAGTTGCGGCGAGTGCGGCAAGTCGTTCCCGCTGAAAGGCAACTTGATGTTCCACGAGCGGTCACATCAGAAGGGCGGCGGCGCGCGCCCCTTCCGCTGCGATGTCTGCTCTAAGGACTTCATGTGCAAAGGGCATTTGATCTCGCACCGTCGCACACACGTGGACGCTGGTGACGCGCCGGAGCCCGAGGCGCGCCCCGCAGGAGACGACTGCACGGCGAAGTGCGTCAAAGTGGAAAACGACCCGCTCGCGCTAGAAAACAAGCCCAAGGTTGAAGAAGTACGTCCAACTGAAATCATTGTACCGCACCCGCAGGCTTCACCGAACAACGCCGCTGTGATGCAGATAGCCAATCAACAGCCCCGTACCGTGACCGTATCGAGCGCGCCTGGTATTACGTCAGCGACATTCACTCATACAGTCGCCGCGCAACACCACGCGGGCGCGGCTATCGCGCACCATCCTGTCAGTGTCACCTACTAG
Protein Sequence: MNPDHHNINTGGGQPPGSSESQGQRVQAAQQQQQGSLPATTSATDLRVNTAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDLGQHASILNGDPNIILGHHGGQSQVTVSAGAQQIPVSQIIATQSGQAHEALVAHSQHSQELVQQAAGSQVSVAGQATHQQVPNNRVEFVQHHNIDMGHHSQQHILQQQLMTARPDHSNQQIQLTVSEDGIVTVVEPGSSKLVDKEELHETIKLPSDHPLTIHQLQQIVGQQLGTQVLENVVRIEQATGEPANILVTHNADGTTSIEASASDPLAIVKDEKTQGKMETAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISTTGSDHDMTAMYKVNVEDLSQLLAYHEVFGKLNTDGQTQSKGELEIEVPGPSQMSEAESSPGHHSCDICGKVFQFRYQLIVHRRYHGESKPYSCQVCGSSFANPAELSRHGKCHLAGDPVERHAKRIPQDRPYACSTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHQCQTCGKKYTRKEHLMNHMRSHTNDTPFRCDLCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTFCPRAFSRKEHLNNHVRQHTGITPHSCSYCNKSFTRKEHLVNHVSDEDPDSDHSEDADVLDDVPELAEQQSPMVPGDAPSCSDDMQRQHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDAAHTCKVCSKPFTRKEHLVTHMSVSSAVAEHALTSDTQHYIRFDKVKVLAREKLFVPRKVREAIEISKRPTFNRDGGWHLPPTWKPCLHGAREDDRESGGDIVSSACWNIPDTHESSSEEDTSAEPTQDDQLPALTLLQPMTSRAARAARRSARRVTDRESHSCGEKPYSCGECGKSFPLKGNLMFHERSHQKGGGARPFRCDVCSKDFMCKGHLISHRRTHVDAGDAPEPEARPAGDDCTAKCVKVENDPLALENKPKVEEVRPTEIIVPHPQASPNNAAVMQIANQQPRTVTVSSAPGITSATFTHTVAAQHHAGAAIAHHPVSVTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00826040; iTF_00206301; iTF_00206298;
90% Identity: -
80% Identity: -