Hato016136.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hypomecis atomaria
Gene Symbol
-
Assembly
GCA_964007245.1
Location
OZ023290.1:8466295-8494915[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 3.9e-05 0.0035 18.9 2.2 1 23 417 439 417 439 0.97
2 20 0.0033 0.3 12.8 0.9 1 20 445 464 445 467 0.94
3 20 2.9e-05 0.0027 19.2 5.6 1 23 486 508 486 508 0.98
4 20 0.00014 0.013 17.1 4.1 1 23 514 536 514 536 0.99
5 20 5.2e-05 0.0047 18.5 5.3 1 23 542 564 542 564 0.97
6 20 6.7e-07 6.1e-05 24.4 4.9 1 23 570 592 570 592 0.98
7 20 1.3e-06 0.00012 23.5 2.3 1 23 598 620 598 620 0.98
8 20 0.00014 0.013 17.1 6.7 1 23 626 648 626 648 0.97
9 20 0.00014 0.013 17.1 6.5 1 23 654 676 654 676 0.97
10 20 6.8e-07 6.2e-05 24.4 1.9 1 23 682 704 682 704 0.98
11 20 6.9e-05 0.0063 18.1 7.9 1 23 710 732 710 732 0.98
12 20 3.5e-05 0.0032 19.0 6.6 1 23 738 760 738 760 0.98
13 20 3.6e-05 0.0033 19.0 4.3 1 23 766 788 766 788 0.98
14 20 8.1e-06 0.00074 21.0 2.4 1 22 794 815 794 815 0.95
15 20 1.5e-05 0.0014 20.1 5.2 1 23 850 872 850 872 0.98
16 20 4.3e-06 0.00039 21.9 6.0 1 23 878 900 878 900 0.98
17 20 8.3e-05 0.0075 17.8 7.9 1 23 906 928 906 928 0.97
18 20 1.7e-06 0.00015 23.2 5.4 1 23 934 956 934 956 0.98
19 20 0.00018 0.017 16.8 0.5 1 23 963 985 963 985 0.97
20 20 0.037 3.4 9.5 5.6 1 23 994 1016 994 1016 0.99

Sequence Information

Coding Sequence
ATGAATCCGGAGCACCACAATATCAATCCGGGTGGTGGTCAGCCCCCTGGGAGTTCCGAGCCTCAAGGGCAGAGAGTGCAAGCTGCACAACAACAGCAGCAAGGAAGCTTACCTGCGACGACATCAGCTACGGATTTACGAGTGAATACAGCAGCTGTTAATGTGGCTTTGTCCAGTGTTGCAAAGTATTGGGTTTTTACCAACTTATTCCCTGGACCAATACCACAAGTTTCAGTGTATGGATTACCTACTGGGACTAGAATTGAAAATGGAAAACCTGTACAGGAGATCACTCAACATGCAAGCATACTTAACGGTGACCCAAACATCATCCTGGGCCATCATGGTGGACAGTCGCAGGTCACTGTGTCTGCGGGTGGCCAGCAGATACCTGTATCACAGATTATTGCGACACAATCAGGTCAGGCACACGAAGCCCTGGTTGGTCACAGCCAAGAGCTAGCGCAGGCTGCTGGAGGATCGCAGGTGTCGGTCGGCGGTCAGCCAACCCACCAGCAGGTACCCAATAACCGGCGGGTCGAATTTGTACAACACCATAACATTGATATGGGACACCATTCCCAACAACACATTCTGCAGCAGCAGCTTATGACAGCCCACCCTGATCACTCCAATCAACAGATCCAGCTGACAGTGAGTGAAGACGGCATCGTGACGGTCGTGGAGCCGAGCAACAGCAAGTTGGTTGACAAGGAGGAGCTCCACGAGACCATCAAACTGCCCTCCGACCATCCCCTGACTATACACCAGCTGCAACAAATTGTTGGCCAACAGCTCGGTTCCCAAGTGCTAGAGAACGTGGTGCGCATAGAGCAGGCGACGGGCGAGCCCGCGAACATTCTGGTCACGCACAATGCGGACGGTACTACGTCCATAGAAGCGAGCGCGTCGGATCCGTTGGCTATCGTCAAGGATGAGAAAACGCAGGGGAAAATGGAGACGGCACAGTTCGCGATACCCGCCGAGATTAAGGATATCAAGGGTATTGATTTGAAGAGTGTGGGCGCGATGGGCATGGAAGGCGCGGTTGTGAAGATATCGACGGGAACCGACCATGACATGACCGCCATGTACAAGGTCAACGTCGAAGACTTGTCACAGTTGCTGGCCTACCACGAGGTCTTCGGGAAACTGAACACAGACGGCCAGGCGCAGAACAAAggtGAATTAGAGATCGAAGTGCCAGGCCCTAGCCAGATGTCGGAAGCGGAGTCGTCGCCCGGACACCATTCCTGTGATATTTGCGGGAAAGTGTTCCAGTTCCGGTATCAACTTATTGTTCACAGACGGTACCACGGTGAAAGCAAACCCTACAGTTGTCAAGTGTGCGGTTCGTCGTTTGCCAATCCGGTCGAATTATCAAGACACGGAAAATGCCATCTTGCCGGAGATCCAGTGGAGAGACACGCGAAGCGAATGCCACAAGACAAGCCGTACGCGTGTACAACTTGCCATAAAACGTTCTCGCGGAAGGAGCATCTCGACAACCACGTGCGGAGTCACACGGGGGAAACGCCTTACAGATGCGACTTCTGCGCGAAAACCTTCACTCGCAAGGAGCACATGGTGAACCACGTGCGGAAACACACGGGCGAGACGCCGCACCGCTGCGACATCTGCAAGAAGAGCTTCACTAGGAAAGAGCACTTCATGAACCACGTCATGTGGCATACAGGTGAAACGCCCCATCAGTGCAATGTTTGTGGCAAGAAGTATACTAGAAAGGAGCATCTCGCGAACCATATGAGGTCTCATACCAACGACACGCCGTTCAGATGTGATCTGTGCGGCAAATCGTTTACAAGAAAGGAACACTTCGTCAATCACATTATGTGGCATACTGgCGAAACCCCCCACCGTTGCGACTTCTGTTCAAAAACATTCACCCGCAAGGAGCACCTACTGAACCACGTGCGGCAACACACGGGCGAGTCTCCGCACCGCTGCAACTTCTGTTCCAAATCGTTCACGCGGCGGGAGCACCTCGTCAACCACGTGCGGCAACACACGGGCGAAACGCCCTTCCAGTGCGGATACTGCCCTAAGGCGTTCACTAGGAAGGATCATCTCGTGAACCACGTCCGGCAACACACGGGCGAGTCCCCGCACAAGTGTTCGTTCTGCACGAAGTCGTTCACCCGCAAGGAGCACCTCACGAACCACGTGCGGCAACACACGGGCGAGTCTCCGCACCGCTGCACCTACTGCGCCAAGTCATTCACCAGGAAAGAGCATCTTACCAACCATGTCCGACAGCACACGGGCGAAACGCCACACAAGTGCGGGTTCTGCCCGCGCGCGTTCTCGCGCAAGGAACACCTCAACAACCACGTGCGGCAACACACCGGCGTCACGCCGCACGCCTGCTCCTACTGCAACAAGAGCTTCACCAGGAAGGAGCATCTCGTCAACCATGTCAGAACCCCTGCTACTTTAACTAAAGCTTCACACGGAAGGAACATCTTGTCAACCATGTCAGTTCTAACAGTAAACTCGTACAACAGGCAACACACGGGCGAAACTCCGTTCAAGTGCACGTTCTGTTCGAAGTCGTTCTCTCGCAAGGAGCACCTCACCAACCACGTCAACCTGCACACGGGCGAGACGCCGCACAAGTGCCCATTCTGCACTAAAACATTCTCCAGGAAAGAGCATCTCACCAACCATGTCAGAATCCACACGGGCGAGTCGCCGCACCGATGCGACTTCTGTCAGAAAACATTCACACGCAAGGAGCATCTGACGAACCATCTCAAGCAACACACGGGCGACGCCGCGCACACTTGCAAGATATGCACCAAGCCTTTCACGAGGAAAGAGCATTTGATCACGCATATGAGGTCTCACAGTTGCGGAGAGAGGCCGTACAGTTGCAACGAGTGCGGGAAATCGTTCCCGTTGAAAGGAAACCTGATGTTCCACGAGCGGTCGCACCAGAAGGGCGCCGGAGCGCGCCCCTTCCGCTGCGACGTCTGCTCTAAGGACTTCATGTGCAAAGGACATTTGATAACGCACCGACGCACGCACAACGACGCGGACGCGGCCACGACCGAGACAAAGGGAGAAGACTGCACCGCTAAGTGCGTCAAGGTGGAAAACGACCCTCTAGCGCTTGAAAGCAAGCAGCCCAAggtTGAAGAAGTGCAGGTAACTGAAACCATCATAGTTCCACATCCACAGACGTCGCCTAACAACGCCGCTGCCGTGATGCAGATAACAAATCAACAACCCCGCGCCGTGAGCGTGTCGAGCGCGTCCGGTATCACATCGGCCACGTTCACCCACACGGTGGCGGGGCAGCACCACGCCGGCGCGGCCATCGCGCACCACCCTGTCAGCGTCACCTACTAG
Protein Sequence
MNPEHHNINPGGGQPPGSSEPQGQRVQAAQQQQQGSLPATTSATDLRVNTAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQEITQHASILNGDPNIILGHHGGQSQVTVSAGGQQIPVSQIIATQSGQAHEALVGHSQELAQAAGGSQVSVGGQPTHQQVPNNRRVEFVQHHNIDMGHHSQQHILQQQLMTAHPDHSNQQIQLTVSEDGIVTVVEPSNSKLVDKEELHETIKLPSDHPLTIHQLQQIVGQQLGSQVLENVVRIEQATGEPANILVTHNADGTTSIEASASDPLAIVKDEKTQGKMETAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISTGTDHDMTAMYKVNVEDLSQLLAYHEVFGKLNTDGQAQNKGELEIEVPGPSQMSEAESSPGHHSCDICGKVFQFRYQLIVHRRYHGESKPYSCQVCGSSFANPVELSRHGKCHLAGDPVERHAKRMPQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCDFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHQCNVCGKKYTRKEHLANHMRSHTNDTPFRCDLCGKSFTRKEHFVNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCGFCPRAFSRKEHLNNHVRQHTGVTPHACSYCNKSFTRKEHLVNHVRTPATLTKASHGRNILSTMSVLTVNSYNRQHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDAAHTCKICTKPFTRKEHLITHMRSHSCGERPYSCNECGKSFPLKGNLMFHERSHQKGAGARPFRCDVCSKDFMCKGHLITHRRTHNDADAATTETKGEDCTAKCVKVENDPLALESKQPKVEEVQVTETIIVPHPQTSPNNAAAVMQITNQQPRAVSVSSASGITSATFTHTVAGQHHAGAAIAHHPVSVTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00926814;
90% Identity
iTF_00143231;
80% Identity
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