Basic Information

Insect: Lycia hirtaria
Gene Symbol: -
Assembly: GCA_947563715.1
Location: OX387385.1:16234871-16237516[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 1.3e-09 8.7e-07 29.2 0.0 3 37 17 51 15 57 0.94

2 2 9.2 6.4e+03 -2.4 0.0 17 29 140 149 134 150 0.62

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	1.3e-09	8.7e-07	29.2	0.0	3	37	17	51	15	57	0.94
2	2	9.2	6.4e+03	-2.4	0.0	17	29	140	149	134	150	0.62

Sequence Information

Coding Sequence: ATGTCTCGAAGATATGAACGAAAGACTCTCCGAGCTTCTTGGAGTGCAGAAGATCTGGAAAAAGCAATGCAATGTGTTCGCAGCAAAGAAATGGGAGTAAATGAGGCTTCAAGAAACTTCAACATTCCGTCTCGAACTCTAAGAAGGCACCTTATAACGGGTAGATCAAAAGTTCCTTTAGGGCGCAACCCAGTATTTTCTAACAAATGCGAGAAAAAGTTAGTTGCTCATATAAAAAAACTAGAAAGTGTCGGCTTTGCCCCAGAAAGAAAAGATGTCAAAGAAATGGCTTTTCAATTGGCTGAGAAACTAAATATAAAAAATCCATTTTCAAAAACGAATGAGGTTGCTGGCAATGTTTGGTTTACTGGGTTTATGGCTCGCAATCCAGAATTAAGTCAAAGAAAATCCGAAGGATTATCTCTTTCTAGGGCGTATGGCGTCAATCGAGAAGACGTCAAAGAGTTTTTTGATTTGTTAACCAAAATATATGAAGAACACGATTTTACAAACCACCCTGAAGATATTTTTAACATGGATGAGTCCGGAATTCAAATAAACAATAAACCTGGCAAAGTAATTGCGACAAAGGGAGCTCGTGATGTTTATACACTTACTAGCTGCGAAAAGGGTGAAAATGTCACAGTTATCGCCTGCTGCAATGCTGTAGGCAACTTCCTTCCTCCTACTTTAATATACAAGGGAGTCTACAACAAACCACAATTTTCCGAAGGTCTTCCGCCAGGTTCACAAGTTTTTATGAACAAAAAATCTTCATATATCAATGCAGATTTGTTCATGAAATGGTTCGAGGATGTATTCTTACGCCACAAGAGCTCAAGAAAGACACTGTTAATATTAGATGGTCACAGCTCGCACAGTAACAATATTCGTCTGCTTGAAGTTGCAAAAGAAAATGACGTCATACTTTTGTGTCTTCCAAGCCATACGACCCATGCCCTGCAACCGCTAGATAGAGCCTTTTTTAGGCCTTTGAAGGTGTATTTTACACAAGAAGCTAAATCATGGATGGTCAGATGTAAAGACAAGAAGTTGACTCGCTATGATGTGGCTCAATTGATCGGAAGAGCTTGGGGTAAAGCTGCCACTAGTTCCAATGGCGTTTCAGCTTTGAAATCATGTGGGATTTATCCCTTTGACCCTACCAATATTCCCGATCACTATTTTGCACTGTCCGATTCTGTAAGAGATCAAAACTTGACGAATGATGAAGAAAATCAAACTTCACGAGACTCACCGTCTTTACTTGAAGACAATTATGACACTGCACTAATCCATGATAACGATATTATGCTGTCTAGAGCACAAATGACACCTGCATGCTATAACAAAGAACCTTTACAACAAAATTACAGTGATGTCGGTAATGAAAAGGTTGAATCTTCACTGCACAATCAATCCGATTCTGCTACTAAAGAATTATCTGAATCTAGGTTGGTATGTGATGAAGAACAGCAAGAGGCAAGAGATTTAGGTTCTCAACTGGATACATGTAGCGCTTCAAATCACCAAAATGTCTCAAGTCACAATCAAAACACTATGTCCCAACAGAGCGACTTTTTTAATAACAATATCGTAGTGGCCACAGTGAGCGTTCACTCACCACCACACAAGCAATCCGGTACTGTGCGTAAGACAAGGTTCACAGGATTAAATCCTAGCATATTGAGAAACATTGACGACTTAAATGAGGTAGAAGAAATATTTGACAATGTATCTAAGCCAGGACCATCATCAGTGAAAGCGGTTATTATGTCTAAAACACCTCAGAAAGACAAATCGTCTGAAACTCAAGAAACACCTAACAAGCTTTTAAGTACGATCCATCCAGTTCCCGTAATACCAGTTATGTCATCAAAGAGAAAACAAAAAGCTGTTGTCCTTACGTCTACAGAAAATATTGAGAAAAGAAAAGCAATTATTAGAAAAAGAAAACCAAAAGTTCAACCTAAAGAAAAAGTCTTAACTAAAAAAGCAAAAGGAAAAAAGACTGGAGAGAAAAAAGCAACTAAGAATAAAGATCCCGATATGACGGATATTTCTGAAGACGAGAACACAGATCAAGCTAAAAATCTTAAACAAACCAAATCAAGAGCACAGAAGGGAAAATCAGGGAAAGCAAAGGGTATATGTGAATATTATAGGTCAAATGGGTCTGAAAATGAAACCTCTGAGAATGATCAAACTACAACATTAACACAGGCTAAAAGAGTCAAGAAAAGAATATTCGAAAAAACAAGAAGCGATAAAAATAATAAAAAACAACATGCCGCCAATATATCAGAAAATGATGACTCAAGCCATGATCAAGAAAATACAAGTAAGAAATCTAAAATTGAAAAGAATACAAAAAAGCCAAAGAAAGGTCAGATAAAAAAGAAAAAAGTAGTTTATTCGTCGTCTTCTGAGTCAGTAGAAGAAATTGATGATGAAGTTGGTACGTCTGAAGAAGAAATCTCGGACTTGGATGAAAGTGCATTGAATGCACAGAAAATTTTTACAAAACTAAATCATCCGAGGATTGGATTAAATGTTCAGTTTGTTCAGGATGGTTGCATGAGTTTTGTACTATGTATGGACGTTTGTGTAATTATTGTGGACGAAAAGCTAAGAGGGAAGCTATGA
Protein Sequence: MSRRYERKTLRASWSAEDLEKAMQCVRSKEMGVNEASRNFNIPSRTLRRHLITGRSKVPLGRNPVFSNKCEKKLVAHIKKLESVGFAPERKDVKEMAFQLAEKLNIKNPFSKTNEVAGNVWFTGFMARNPELSQRKSEGLSLSRAYGVNREDVKEFFDLLTKIYEEHDFTNHPEDIFNMDESGIQINNKPGKVIATKGARDVYTLTSCEKGENVTVIACCNAVGNFLPPTLIYKGVYNKPQFSEGLPPGSQVFMNKKSSYINADLFMKWFEDVFLRHKSSRKTLLILDGHSSHSNNIRLLEVAKENDVILLCLPSHTTHALQPLDRAFFRPLKVYFTQEAKSWMVRCKDKKLTRYDVAQLIGRAWGKAATSSNGVSALKSCGIYPFDPTNIPDHYFALSDSVRDQNLTNDEENQTSRDSPSLLEDNYDTALIHDNDIMLSRAQMTPACYNKEPLQQNYSDVGNEKVESSLHNQSDSATKELSESRLVCDEEQQEARDLGSQLDTCSASNHQNVSSHNQNTMSQQSDFFNNNIVVATVSVHSPPHKQSGTVRKTRFTGLNPSILRNIDDLNEVEEIFDNVSKPGPSSVKAVIMSKTPQKDKSSETQETPNKLLSTIHPVPVIPVMSSKRKQKAVVLTSTENIEKRKAIIRKRKPKVQPKEKVLTKKAKGKKTGEKKATKNKDPDMTDISEDENTDQAKNLKQTKSRAQKGKSGKAKGICEYYRSNGSENETSENDQTTTLTQAKRVKKRIFEKTRSDKNNKKQHAANISENDDSSHDQENTSKKSKIEKNTKKPKKGQIKKKKVVYSSSSESVEEIDDEVGTSEEEISDLDESALNAQKIFTKLNHPRIGLNVQFVQDGCMSFVLCMDVCVIIVDEKLRGKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00926540; iTF_00926541;
90% Identity: iTF_00926540; iTF_00926541;
80% Identity: iTF_00926541;