Lhir013167.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387384.1:2156593-2159259[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.1e-10 4.9e-07 30.0 0.0 3 37 17 51 15 57 0.94 2 2 9.3 6.5e+03 -2.4 0.0 17 29 140 149 134 150 0.62
Sequence Information
- Coding Sequence
- ATGTCTCGAAGATATGAACGAAAGACTCTCCGAGCTTCTTGGAGTGCAGAAGATATGGAAAAAGCAATGCAATGTGTTCGCAGCAAAGAAATGGGAGTAAATGAGGCTTCAAGAAACTTCAACATTCCGTCTCGAACTCTAAGAAGGCACCTTATAACGGGTAGATCAAAAGTTCCTTTAGGGCGCAACCCAGTATTTTCTAACAAATGCGAGAAAAAGTTAGTTGCTCATATAAAAAAACTAGAAAGTGTCGGCTTTGCCCCAGAAAGAAAAGATGTCAAAGAAATGGCTTTTCAATTGGCTGAGAAACTAAATATAAAAAATCCATTTTCAAAAACGAATGAGGTTGCTGGCAATGTTTGGTTTACTGGGTTTATGGCTCGCAATCCAGAATTAAGTCAAAGAAAATCCGAAGGATTATCTCTTTCTAGGGCGTATGGCGTCAATCGAGAAGATGTCAAAGAGTTTTTTGATTTGTTAACCAAAATATATGAAGAACACGATTTTACAAACCACCCTGAAGATATTTTTAACATGGATGAGTCCGGAATTCAAATAAACAATAAACCTGGCAAAGTAATTGCGACAAAGGGAGCTCGTGATGTTTATACACTTACTAGCTGCGAAAAGGGTGAAAATGTCACAGTTATCGCCTGCTGCAATGCTGTAGGCAACTTCCTTCCTCCTACTTTAATATACAAGGGAGTCTACAACAAACCACAATTTTCCGAAGGTCTTCCGCCAGGTTCACAAGTTTTTATGAACAAAAAATCTTCATATATCAATGCAGATTTGTTCATGAAATGGTTCGAGGATGTATTCTTACGCCACAAGAGCTCAAGAAAGACACTGTTAATATTAGATGGTCACAGCTCGCACAGTAACAATATTCGTCTGCTTGAAGTTGCAAAAGAAAATGACGTCATACTTTTGTGTCTTCCAAGCCATACGACCCATGCCCTGCAACCGCTAGATAGAGCCTTTTTTAGGCCTTTGAAGGTGTATTTTACACAAGAAGCTAAATCATGGATGGTCAGATGTAAAGACAAGAAGTTGACTCGCTATGATGTGGCTCAATTGATCGGAAGAGCTTGGGGTAAAGCTGCCACTAGTTCCAATGGCGTTTCAGCTTTGAAATCATGTGGGATTTATCCCTTTGACCCTACCAATATTCCCGATCACTATTTTGCACTGTCCGATTCTGTAAGAGATCAAAACTTGACGAATGATGAAGAAAATCAAACTTCACGAGACTCACCGTCTTTACTTGAAGACAATTATGACACTGCACTAATCCATGATAACGATATTATGCTGTCTAGAGCACAAATGACTCCTGCATGCTATAACAAAGAACCTTTACAACAAAATTACAGTGATGTCGGTAATGAAAAGGTTGACTCTTCACTGCACAATCAATCCGATTCTGCTACTAAAGAATTATCTGAATCTAGGTTGGTATGTGATGAAGAACAGCAAGAGGCAAGAGATTTAGGTTCTCAACTGGATACATGTAGCGCTTCAAATCACCAAAATGTCTCAAGTCACAATCAAAACACTATGTCCCAACAGAGCGACTTTTTTAATAACAATATCGTAGTGGCCACAGTGAGCGTTCACTCACCACCACACAAGCAATCCGGTACTGTGCGTAAGACAAGGTTCACAGGATTAAATCCTAGCATATTGAGAAACATTGACGACTTAAATGAGGTAGAAGAAATATTTGACAATGTATCTAAGCCAGGACCATCATCAGTGAAAGCGGTTATTATGTCTAAAACACCTCAGAAAGACAAATCGTCTGAAACTCAAGAAACACCTAACAAGCTTTTAAGTACGATCCATCCAGTTCCCGTAATACCAGTTATGTCATCAAAGAGAAAACAAAAAGCTGTTGTCCTTACGTCTACAGAAAATATTGAGAAAAGAAAAGCAATTATTAGAAAAAGAAAACCAAAAGTTCAACCTAAAGAAAAAGTCTTAACTAAAAAAGCAAAAGGAAAAAAGACTGGAGAGAAAAAAGCAACTAAGAATAAAGATCCCGATATGACGGATATTTCTGAAAACGAGAACACAGATCAAGCTAAAAATCTTAAACAAACCAAATCAAGAGCACAGAAGGGAAAATCAGGGAAAGCAAAGGGTATATGTGAATATTATAGGTCAAATGGGTCTGAAAATGAAACCTCTGAGAATGATCAAACTACAACATTAACACAGGCTAAAAGAGTCAAGAAAAGAATATTCGAAAAAACAAGAAGCGATAAAAATAATAAAAAACAAGATGCCGCCAATATATCAGAAAATGATGACTCAAGCCATGATCAAGAAAATACAAGTAAGAAATCTAAAATTGAAAAGAATACAAAAAAGCCAAAGAAAGGTCAGATAAAAAAGAAAAAAGTAGTTTATTCGTCGTCTTCTGAGTCAGTAGAAGAAATTGATGATGAAGTTGGTACGTCTGAAGAAGAAATCTCGGACTTGGATGAAAACAAGTGCATTGAATGCACAGAAAATTTTTACAAAACTAAATCATCCGAGGATTGGATTAAATGTTCAGTTTGTTCAGGATGGTTGCATGAGTTTTGTACTATGTATGGACGTTTGTGTAATTATTGTGGACGAAAAGCTAAGAGGGAAGCTATGAAGAAAACAAGCCACTAA
- Protein Sequence
- MSRRYERKTLRASWSAEDMEKAMQCVRSKEMGVNEASRNFNIPSRTLRRHLITGRSKVPLGRNPVFSNKCEKKLVAHIKKLESVGFAPERKDVKEMAFQLAEKLNIKNPFSKTNEVAGNVWFTGFMARNPELSQRKSEGLSLSRAYGVNREDVKEFFDLLTKIYEEHDFTNHPEDIFNMDESGIQINNKPGKVIATKGARDVYTLTSCEKGENVTVIACCNAVGNFLPPTLIYKGVYNKPQFSEGLPPGSQVFMNKKSSYINADLFMKWFEDVFLRHKSSRKTLLILDGHSSHSNNIRLLEVAKENDVILLCLPSHTTHALQPLDRAFFRPLKVYFTQEAKSWMVRCKDKKLTRYDVAQLIGRAWGKAATSSNGVSALKSCGIYPFDPTNIPDHYFALSDSVRDQNLTNDEENQTSRDSPSLLEDNYDTALIHDNDIMLSRAQMTPACYNKEPLQQNYSDVGNEKVDSSLHNQSDSATKELSESRLVCDEEQQEARDLGSQLDTCSASNHQNVSSHNQNTMSQQSDFFNNNIVVATVSVHSPPHKQSGTVRKTRFTGLNPSILRNIDDLNEVEEIFDNVSKPGPSSVKAVIMSKTPQKDKSSETQETPNKLLSTIHPVPVIPVMSSKRKQKAVVLTSTENIEKRKAIIRKRKPKVQPKEKVLTKKAKGKKTGEKKATKNKDPDMTDISENENTDQAKNLKQTKSRAQKGKSGKAKGICEYYRSNGSENETSENDQTTTLTQAKRVKKRIFEKTRSDKNNKKQDAANISENDDSSHDQENTSKKSKIEKNTKKPKKGQIKKKKVVYSSSSESVEEIDDEVGTSEEEISDLDENKCIECTENFYKTKSSEDWIKCSVCSGWLHEFCTMYGRLCNYCGRKAKREAMKKTSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00926542;
- 90% Identity
- iTF_00926542;
- 80% Identity
- -