Basic Information

Transcription Factor Domain

TF Family: CSL
Domain: BTD domain
PFAM: PF09270
TF Group: Beta-Scaffold Factors
Description: Members of this family of DNA binding domains adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and co-repressors (SMRT/N-Cor and CIR) [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0023 33 5.2 0.0 32 52 35 55 24 57 0.85

2 13 0.0024 35 5.2 0.1 32 53 55 76 53 87 0.88

3 13 0.019 2.6e+02 2.3 0.0 32 52 75 95 73 98 0.89

4 13 0.0029 41 4.9 0.1 32 53 95 116 93 120 0.89

5 13 0.0029 41 4.9 0.1 32 53 115 136 113 140 0.89

6 13 0.0042 59 4.4 0.0 32 52 135 155 133 158 0.89

7 13 0.0032 46 4.8 0.1 32 53 155 176 153 180 0.88

8 13 0.0045 63 4.3 0.0 32 52 175 195 173 197 0.89

9 13 0.0028 40 5.0 0.1 32 53 195 216 193 225 0.88

10 13 0.02 2.9e+02 2.2 0.0 32 52 215 235 213 237 0.89

11 13 0.003 43 4.9 0.1 32 52 235 255 230 258 0.89

12 13 0.0037 53 4.6 0.1 32 52 255 275 253 277 0.90

13 13 0.013 1.8e+02 2.9 0.0 32 55 275 298 274 303 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0023	33	5.2	0.0	32	52	35	55	24	57	0.85
2	13	0.0024	35	5.2	0.1	32	53	55	76	53	87	0.88
3	13	0.019	2.6e+02	2.3	0.0	32	52	75	95	73	98	0.89
4	13	0.0029	41	4.9	0.1	32	53	95	116	93	120	0.89
5	13	0.0029	41	4.9	0.1	32	53	115	136	113	140	0.89
6	13	0.0042	59	4.4	0.0	32	52	135	155	133	158	0.89
7	13	0.0032	46	4.8	0.1	32	53	155	176	153	180	0.88
8	13	0.0045	63	4.3	0.0	32	52	175	195	173	197	0.89
9	13	0.0028	40	5.0	0.1	32	53	195	216	193	225	0.88
10	13	0.02	2.9e+02	2.2	0.0	32	52	215	235	213	237	0.89
11	13	0.003	43	4.9	0.1	32	52	235	255	230	258	0.89
12	13	0.0037	53	4.6	0.1	32	52	255	275	253	277	0.90
13	13	0.013	1.8e+02	2.9	0.0	32	55	275	298	274	303	0.86

Coding Sequence: ATGTGTCTCATTACCACCAACCCTCCAGCCTCCGGCATAACCACCAACCCTCCAGCCTCCGGCATAACCACCAACCCTCCAGCCTCCGGCAtaaccaccaactcgcctgatACCTACTTAGGATACCAAAACGTTATACAACTAATCTGCACCTTGCACGGCGTGCATGAGACCTACTTAGGATACCAAAACGTTATACAACTAATCTGCACCTTGCACGGCGTGCATGAGACCTACTTAGGATACCAAAACGTTATACAACTAATCAGCACCTTGCACGGCGTGCATGAGACCTACTTAGGATACCAAAACGTTATACAACTAATCTGCACCTTGCACGGCGTGCATGAGACCTACTTAGGATACCAAAACGTTATACAACTAATCTGCACCTTGCACGGCGTGCATGAGACCTACTTAGGATACCAAAACGTTATACAACTAATCTGCACCTTGCACGGCATGCATGAGACCTACTTAGGATACCAAAACGTTATACAACTAATCTGCACCTTGCACGGCGTGCATGAGACCTACTTAGGATACCAAAACGTTATACAACTAATCTGCACCTTGCACGGCATGCATGAGACCTACTTAGGATACCAAAACGTTATACAACTAATCTGCACCTTGCACGGCGTGCATGAGACCTACTTAGGATACCAAAACGTTATACAACTAATCAGCACCTTGCACGGCGTGCATGAGACCTACTTAGGATACCAAAACGTTATACAACTAATCTGCACCTTGCACGGCGTGCATGAGACCTACTTAGGATACCAAAACGTTATACAACTAATCTGCACCTTGCACGGCGTGCATGAGACCTACTTAGGATACCAAAACGTTATACAACTAATCTGCACCTTGCACGACGTGCATGAGCCTACTTATGATACCAAAACGTTATACAACTGA
Protein Sequence: MCLITTNPPASGITTNPPASGITTNPPASGITTNSPDTYLGYQNVIQLICTLHGVHETYLGYQNVIQLICTLHGVHETYLGYQNVIQLISTLHGVHETYLGYQNVIQLICTLHGVHETYLGYQNVIQLICTLHGVHETYLGYQNVIQLICTLHGMHETYLGYQNVIQLICTLHGVHETYLGYQNVIQLICTLHGMHETYLGYQNVIQLICTLHGVHETYLGYQNVIQLISTLHGVHETYLGYQNVIQLICTLHGVHETYLGYQNVIQLICTLHGVHETYLGYQNVIQLICTLHDVHEPTYDTKTLYN

Sequence clustering based on sequence similarity using MMseqs2