Lphl018599.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lycaena phlaeas
Gene Symbol
L
Assembly
GCA_905333005.1
Location
HG995171.1:10642612-10652234[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.62 51 5.1 5.8 1 23 141 163 141 163 0.97
2 15 8.4e-06 0.00069 20.5 4.1 1 23 169 191 169 191 0.99
3 15 2.6e-05 0.0021 18.9 0.1 1 23 197 219 197 219 0.98
4 15 2e-05 0.0016 19.3 0.1 2 23 235 257 234 257 0.95
5 15 5.9 4.9e+02 2.0 0.1 9 23 288 303 284 303 0.93
6 15 0.3 25 6.1 0.0 3 23 359 379 358 379 0.97
7 15 0.14 11 7.2 0.0 2 23 392 413 391 413 0.91
8 15 0.0009 0.075 14.1 1.1 1 23 421 444 421 444 0.94
9 15 0.011 0.92 10.6 0.2 1 23 449 472 449 472 0.94
10 15 0.00039 0.032 15.2 0.1 1 23 532 557 532 557 0.96
11 15 0.0002 0.016 16.1 0.1 2 23 608 629 607 629 0.96
12 15 0.16 13 7.0 0.0 1 23 637 659 637 659 0.97
13 15 5 4.2e+02 2.3 0.4 2 23 667 688 666 689 0.90
14 15 9.5 7.8e+02 1.4 0.0 3 23 696 716 695 716 0.93
15 15 0.46 38 5.5 0.6 1 23 763 785 763 785 0.94

Sequence Information

Coding Sequence
ATGCCTCCCAAACTTATCCAGAATAAACTGTATTCTGTTAAAATCCCATCCAGGGATGAGTGGTTAAACAGTCGTATTGTATGGAAACCAGGAAGCCTGAAGTGGTACACCGATGGCTCCAAATCCGGCTCACGAGTAGGATGTGGAATCTTCGGCGAGCTACCCAAGATGGCTATTAGCCGCAACTTGGATCCGGGTCACCTCACCAAAGGCGGCATTGGTGGCACTCACCGGGTTTTAGTGGGTAAAGCTGCATCCGCTTACCAGCTTTCGGGCGCAGGCAGTCCCCGCCCTGGGGAGACCCACTCCCCAGCGAAATGCCTCAGCGCATTTCCCGGGGTTAAAGAAAAAAAAAGATACGTTGCCCATGTGAATGAGTGGTGCCGTGGTCCTTGTCCGACGCACTCCGATCAGATGCCATTTCGCTGCGAGTTCTGTTCGAGGCTGTTCAAGCACAAGCGCTCCCGTGATCGGCACGTCAAGCTGCACACGGGAGACAGGAAGTATCGCTGCGCGCACTGCGAGTCCGCCTTTTCTAGGAGTGATCACCTGAAAATCCACATGAAGACGCACGACAATCAAAAGCCGTTCCAGTGTACGGTTTGCAACCGAGGGTACAACACGGCTGCGGCATTGACGTCACACATGCAGGGCCACAAGCGCGACCGTGAAGGACGGGAGCCGGACAGGAGACGGGCTCTGCGCTGCCTGCGCTGCGGGGAGGCGTTCAGAAGACCTGACATGCTACAGGCGCACATGACCAGCGTACACGGAGTTGAAACAACGTCTATGACTCCCCCTCGTCGGGTAGCATCTCAACCGCCGCCTACTCTACTCGCCTGCATATACTGCACTAGAGACACGTTCACGAGCATGGAACAGTTGCAGTTGCATGTACGCGCTGCGCACTCGGCCATCTTGAACGGTGAAGCGCCGGCGCAATACACAGTAGACCAACCCACACCAACAGACTTAAGTAGACGGAGTTCTGATGATGCACCTGTAGCAAAACGTCCACGATCCAGCGCGGGTTCTGTCACGTCAAAGACCACACTTTCACCGAGCACTTTGTTATGCAATCAATGTGACGCAGCCTTACCAGACTTTGAAGCGTTCAGAGCACATTTAAAGGGACATCTAGAAGAAGGAGGCGAACTTCGTACGAGTCCAACTCCATGCGTTCATTGCGGTGCAACGTTTGCTGATGCGGCCGCTTCAGAGAGACATTTAGCCGCACACTATTTAGCCGTTTCTTGTGAATATAATTGTCACAGCTGTGCTCGAAGTTTCCCTACGACTGAAGAACTACAAAAGCACCTACTGGAAATGCACACACATCACATATACCGATGTTCCCTTTGCAAAGAAATATTTGATTCCAAGGTTTCGATACAGGCTCACTTCGCAATGGCGCATAGTGGCGAGAACAAGGTATGGGTTTGTCGGTCGTGCGGCGCCGCCGGTGGGGCCCTTCGCTCGGAGGCTGAGGGCGCGGCGCACGTGCGGGCGAGGCATGCGGCCGCGCGCTGCGCCTGCGGGGCCGTGCTGCCCGGGGCCCGCGCGCTAAGGGCCCACACTGCTGCGCACCACGCCTACCGATGCCCAATTCCAAGCTGCACTGAAACGTTCGCTGTACAATACCTACTTGAGCGGCATATGCAGGCTTACCACGCTATTGCACAACAGGTTGTAAACGGTGACGTGACAAGGGTGAAACGGGGTGAAAACAATAACGGATTAGAAGAAGACTGTCCGCCGTGCGTCACGGTCGAAGGCAATGGGTCTGATGAAAGGCGACGCAAGAACGGCACAGTGGCGCTGCAGTGTGCGTACTGCGGCGAGCGCACGCGCAGCCGAGCTGAGCTGGAAGCGCATACCCGCGCGCACTCCGGCACCGCGGCCACCAGGCACAAGTGTCTCATATGCGACGAAATACTACCGTCCGCTGCTGTGCTCGCTGAACATAAACTTACGCATTGCAAGGTCATTGCTGGAGACGTGTGCGCACGATGCCGATCCCGCCTCCCTTCTGAGGATGCTTTCTTGTCCCACATGGCGCGGCACCACCCAGCTCTACCCGCGCCGTGCGTCATATGTCGCCAAACCCTAGCGTCAGAAGCTGAAGCACGCTTACACGCTAGATTTCACTTACGTCCAAACGAAGATGAACAGAGGTGTGCAATATGCCTAAGAGCGCTGTCTGAGAGTGAGGCTGGCGATGGTGCTAGGGCGTGCTCTTCGTGTTACGCCCGACATGCCACTCCACGGCCTCCTCCCCCAGCCGACCACGATTGTAGGCTATGCCGTCGTACTTTAGGCTCGCCAACACGATTACAAGCTCATCTAATAGAGCACACGTTCGCCGGCATCGGAGCGTTCACATGTTACTTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTAAAGTTTTTCTTCCGTGCAGAACTAGACAATCACGCGTTTGTCCATTTGGAAGAGGCTGAAATTGCTCAAAGGGCGTTCTACGAGGCTTACGCACGTGGCGCTGCTTCAGCGTGGGCAGCTTTGCAACCGACTGAACCCACACCACAACCGCCAGTGACGTCCCCTTCGCAACCAGCACCAGTGAAGCAAGAGCCGGAGATAAAAGAAGAACGCGTTGATGAGTATATAGAAGTTGCGTCGCCGCCACCCCCACAAGTTGAAGCAGTGGCAAGCCCGCCTCCTGTAGTGAAGCAAGAGAAGAAAGAGGAAGAATAA
Protein Sequence
MPPKLIQNKLYSVKIPSRDEWLNSRIVWKPGSLKWYTDGSKSGSRVGCGIFGELPKMAISRNLDPGHLTKGGIGGTHRVLVGKAASAYQLSGAGSPRPGETHSPAKCLSAFPGVKEKKRYVAHVNEWCRGPCPTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRRALRCLRCGEAFRRPDMLQAHMTSVHGVETTSMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSAILNGEAPAQYTVDQPTPTDLSRRSSDDAPVAKRPRSSAGSVTSKTTLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELRTSPTPCVHCGATFADAAASERHLAAHYLAVSCEYNCHSCARSFPTTEELQKHLLEMHTHHIYRCSLCKEIFDSKVSIQAHFAMAHSGENKVWVCRSCGAAGGALRSEAEGAAHVRARHAAARCACGAVLPGARALRAHTAAHHAYRCPIPSCTETFAVQYLLERHMQAYHAIAQQVVNGDVTRVKRGENNNGLEEDCPPCVTVEGNGSDERRRKNGTVALQCAYCGERTRSRAELEAHTRAHSGTAATRHKCLICDEILPSAAVLAEHKLTHCKVIAGDVCARCRSRLPSEDAFLSHMARHHPALPAPCVICRQTLASEAEARLHARFHLRPNEDEQRCAICLRALSESEAGDGARACSSCYARHATPRPPPPADHDCRLCRRTLGSPTRLQAHLIEHTFAGIGAFTCYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALQPTEPTPQPPVTSPSQPAPVKQEPEIKEERVDEYIEVASPPPPQVEAVASPPPVVKQEKKEEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01437318;
90% Identity
iTF_01178881;
80% Identity
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