Basic Information

Insect: Lycaena phlaeas
Gene Symbol: -
Assembly: GCA_905333005.1
Location: HG995166.1:1144120-1147120[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.041 3.4 8.8 0.1 1 20 111 130 111 131 0.96

2 12 8.7e-05 0.0072 17.3 2.4 1 23 227 249 227 249 0.96

3 12 0.00017 0.014 16.4 1.3 1 23 258 280 258 280 0.98

4 12 0.00034 0.028 15.4 2.5 1 23 288 311 288 311 0.96

5 12 0.38 32 5.8 2.1 1 23 317 339 317 339 0.95

6 12 3.7e-06 0.00031 21.6 2.8 1 23 345 367 345 367 0.98

7 12 5.2e-07 4.3e-05 24.2 1.6 1 23 373 395 373 395 0.96

8 12 1.4e-05 0.0012 19.7 0.2 1 23 401 423 401 423 0.99

9 12 6.2e-07 5.1e-05 24.0 0.6 1 23 429 451 429 451 0.98

10 12 1.3e-05 0.001 19.9 0.5 1 23 457 479 457 479 0.98

11 12 6.8e-05 0.0057 17.6 3.4 1 21 485 505 485 507 0.96

12 12 1.5e-06 0.00012 22.8 0.1 1 23 513 535 513 535 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.041	3.4	8.8	0.1	1	20	111	130	111	131	0.96
2	12	8.7e-05	0.0072	17.3	2.4	1	23	227	249	227	249	0.96
3	12	0.00017	0.014	16.4	1.3	1	23	258	280	258	280	0.98
4	12	0.00034	0.028	15.4	2.5	1	23	288	311	288	311	0.96
5	12	0.38	32	5.8	2.1	1	23	317	339	317	339	0.95
6	12	3.7e-06	0.00031	21.6	2.8	1	23	345	367	345	367	0.98
7	12	5.2e-07	4.3e-05	24.2	1.6	1	23	373	395	373	395	0.96
8	12	1.4e-05	0.0012	19.7	0.2	1	23	401	423	401	423	0.99
9	12	6.2e-07	5.1e-05	24.0	0.6	1	23	429	451	429	451	0.98
10	12	1.3e-05	0.001	19.9	0.5	1	23	457	479	457	479	0.98
11	12	6.8e-05	0.0057	17.6	3.4	1	21	485	505	485	507	0.96
12	12	1.5e-06	0.00012	22.8	0.1	1	23	513	535	513	535	0.99

Sequence Information

Coding Sequence: ATGGAATATGATATTTTGTTCATTGATAATATCTGTCGGACTTGTTTAAAAGAGTCTTCCAATTTAAAGCCACTATTGTACAAAGTAGATGGCGAGGGTCGGACGATTTGCGAAGTGTTATCTTTTGTTTCCAATATTGATATTTGTATTAGCGATAAGTACCCCAAACAAGTTTGTGATGCGTGCCAAGACAATTTACTAAAAGCTGATGAATTTAAAAAACGGTGCATTCAATCTGAAACGGTGTTAAAAGTGTGTTTTGGACGAAGCGAATTAGGTGCATCCGTGAAAAATGAAAACATTCCAAGCTCAAACAACGACAAAGAATTCTACCAGTGCGCTATATGTCTCCTTAAATTTTCTGACGGACATGCCTTAGAAAATCATGTTGCTTGTCATCGAATTTTCAAAGAGGAATCTCCTAAAAGACCTGATTCTTCATCAGAAATTATAGAAGGCTCTGTGTGCCAGAATAACTTCCCTAATGACGCTAATAATTTGGAGAAAGATCATTTGGCTCAATTAAAGGAAGAAGCAGTTGATTTTGACAATGATGATCTTGGGATGGGTTTTGATAATGATATATCGTATGAGCCACAATCATGTCAAGTGGAAATTGAAATCCCGAATTTCGATTGTATAAAAGAATCCAAAGAAAATATCAAATCTGAATTGCAACATGAATGTGAAATATGTAAGAAACAATTTGATTCTAAAAGGGCTTTACAGAGACATTCAAACCTGCATATGACAATTAGTCCAAAATATGAATATGAATGCTCTCTATGCACTCGTAAGTTTCAAAAAAAGGCATCATTAGTTACACATTTAAAGATTCACGAGGAAAGAAATAAAATAAAATTCATGTGCCCGACATGCAGACGAGAGTTTCAACATCAAGCTCACTTGGACAAGCACATTTTATCTGCACACCAAAAGAAAGTTGAATTTGCCTGTGACCGTTGCTCAAAATGGTTTTCTACACAGAAAGGACTAGAGTGCCATCAAGAAAGTCACGATATTGAAAAAAGACACCAGTGCAAGACATGTGGAAAAGCCTTTTATATGCTGTCAACACTAACGGATCATTTAAGGACTCACACGGGAGAGAAGCCATATTTGTGTTCTGTATGTGGGAAAGGCTTTAGTCAGAAAACAAATTTGCAGCAACACACTAAAAGACATTTTGGCATAAAGACATTTAAATGTGACCAGTGTGAGAGAGGGTTTGTTTCAAAGGGTGAGTTGGTTGCCCATGCGAGAAAACACAGCGGAGCACATCCATTCATATGTGATGAATGTGGAAATGGTTTTACTACGTCCAGTTCCCTTGTCAAACACCGACGCACTCACACAGGAGAGCGACCTTACGCCTGCGACCTCTGTCCCATGAAATTTAGTGTTTCTGGCACTTTGAAAAACCACAGAAGGACCCACACCGGTGAAAAGCCTTACCAATGTTCGCACTGTGAGAAGGCTTTCATACAGCGGCAGGATTTAATATCGCACATCCGATGTCACACTGGTGAAAGGCCGTATACATGTAACGTGTGTGGACAAGCTTTTAGGAAAACTGCAGCTTTAAAAGCTCATATCAAGATTCATGGATAA
Protein Sequence: MEYDILFIDNICRTCLKESSNLKPLLYKVDGEGRTICEVLSFVSNIDICISDKYPKQVCDACQDNLLKADEFKKRCIQSETVLKVCFGRSELGASVKNENIPSSNNDKEFYQCAICLLKFSDGHALENHVACHRIFKEESPKRPDSSSEIIEGSVCQNNFPNDANNLEKDHLAQLKEEAVDFDNDDLGMGFDNDISYEPQSCQVEIEIPNFDCIKESKENIKSELQHECEICKKQFDSKRALQRHSNLHMTISPKYEYECSLCTRKFQKKASLVTHLKIHEERNKIKFMCPTCRREFQHQAHLDKHILSAHQKKVEFACDRCSKWFSTQKGLECHQESHDIEKRHQCKTCGKAFYMLSTLTDHLRTHTGEKPYLCSVCGKGFSQKTNLQQHTKRHFGIKTFKCDQCERGFVSKGELVAHARKHSGAHPFICDECGNGFTTSSSLVKHRRTHTGERPYACDLCPMKFSVSGTLKNHRRTHTGEKPYQCSHCEKAFIQRQDLISHIRCHTGERPYTCNVCGQAFRKTAALKAHIKIHG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00787006;
90% Identity: iTF_00787006;
80% Identity: -