Basic Information

Insect: Helleia helle
Gene Symbol: -
Assembly: GCA_963853865.1
Location: OY971418.1:26253389-26255349[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.12 13 7.4 0.1 1 20 111 130 111 131 0.95

2 12 9.6e-06 0.001 20.3 2.3 1 23 228 250 228 250 0.97

3 12 0.00017 0.018 16.4 1.3 1 23 259 281 259 281 0.98

4 12 0.00038 0.04 15.2 2.6 1 23 289 312 289 312 0.96

5 12 0.002 0.21 13.0 0.6 1 23 318 340 318 340 0.97

6 12 2.9e-06 0.0003 21.9 2.4 1 23 346 368 346 368 0.98

7 12 5.2e-07 5.5e-05 24.2 1.6 1 23 374 396 374 396 0.96

8 12 1.4e-05 0.0015 19.7 0.2 1 23 402 424 402 424 0.99

9 12 6.1e-07 6.5e-05 24.0 0.6 1 23 430 452 430 452 0.98

10 12 1.2e-05 0.0013 19.9 0.5 1 23 458 480 458 480 0.98

11 12 6.8e-05 0.0072 17.6 3.4 1 21 486 506 486 508 0.96

12 12 1.5e-06 0.00015 22.8 0.1 1 23 514 536 514 536 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.12	13	7.4	0.1	1	20	111	130	111	131	0.95
2	12	9.6e-06	0.001	20.3	2.3	1	23	228	250	228	250	0.97
3	12	0.00017	0.018	16.4	1.3	1	23	259	281	259	281	0.98
4	12	0.00038	0.04	15.2	2.6	1	23	289	312	289	312	0.96
5	12	0.002	0.21	13.0	0.6	1	23	318	340	318	340	0.97
6	12	2.9e-06	0.0003	21.9	2.4	1	23	346	368	346	368	0.98
7	12	5.2e-07	5.5e-05	24.2	1.6	1	23	374	396	374	396	0.96
8	12	1.4e-05	0.0015	19.7	0.2	1	23	402	424	402	424	0.99
9	12	6.1e-07	6.5e-05	24.0	0.6	1	23	430	452	430	452	0.98
10	12	1.2e-05	0.0013	19.9	0.5	1	23	458	480	458	480	0.98
11	12	6.8e-05	0.0072	17.6	3.4	1	21	486	506	486	508	0.96
12	12	1.5e-06	0.00015	22.8	0.1	1	23	514	536	514	536	0.99

Sequence Information

Coding Sequence: ATggaatatgatattttattcattGATAATATTTGTAGGACTTGTCTAAAAGAAGCCCCTAATTTCAAGCCACTCTTGTACAAAGTAGATGACGAGGGTCGGACGATTTGTGAAGTGTTGTCTTTTGTAtcaaatattgatatttgtatTAGTGATAAGTACCCTAAACAAGTTTGTGATACGTGCCAAGACAATTTACTAAAGGCTGATGAATTCAAAAAACGGTGTATTCAATCTGAAACAGTATTAAAAGTGTGTTTTGGTCGAAGTGAATTAGCTGCTTCtgtaaaaaatgaaaacattccAAACTCAAATAACGATAGAGACTTCTACCAGTGTGCTTTATGTTTGCTTAAATTTTCTGATGGGCATGCCTTAGAAAATCATGTTGCCTGTCATCGAACTTTCAAAGAGGAATCTCCTAAAAGACCAGATTCTTCATCAGAAATTATAGAAGGATCTTCATGCCAGAATAACTTCCCTAATGCCACTAATAATTCAGAGGAAGATCATTTGCGTGAATTAAAACAAGAAGCAGTTGATTTTGACAATGATGATCTTGGCATTGTTTTTGATGATGACAATATATCTTACAACCCAAAACCATGTCAAGtggaaattgaaatcccgaatTACGATTGTATAAAAGAATCCAAAGAAAATATCAAAACTGAATTACAACATGAATGTGAAATATGTAAGAAACAATTTGATTCTAAAAAGGCTTTACAGAGACATTTAAACTTGCATATGACAATTAGTCCAAAATATGAATATGAATGCTCTTTATGTACTCGTAAGTTCCAAAAAAAGGCATCATTAGTTACACATTTGAAGATTCATGAGGAAAGAGATAAAATAAGATTCATGTGCCCAACGTGCCGACGAGAGTTTCAGCATCAAGCTCACTTGGACAAGCACATTTTGTCTGTACACCAAAAGAAAGTTGAGTTTGCCTGTGACCGCTGCTCTAAATGGTTCTCTACACAGAAAGGACTTGAGAGCCATCAAGAAAGTCACAATATTGAAAAAAGACACCAGTGCAATACATGTGGAAAAGCTTTTTATATGCTGTCGACACTGACGGATCACTTAAGGACTCACACAGGAGAAAAGCCATATTTGTGTTCTGTGTGCGGAAAGGGTTTTAGTCAGAAAACTAATTTGCAACAACACACCAAAAGACATTTTGgcattaaaaagtttaaatgtgACCAGTGTGAGAGAGGATTTGTTTCCAAAGGCGAGTTAGTTGCCCATGCAAGAAAACATAGTGGAGCACATCCATTCATATGTGATGAATGTGGAAATGGTTTCACTACATCGAGTTCCCTTGTCAAACACCGTCGCACACACACAGGAGAGCGACCTTACGCATGCGACCTCTGTCCTATGAAGTTTAGTGTTTCCGGCACTTTGAAAAACCACAGAAGGACCCACACTGGTGAAAAGCCCTACCAATGTTCACATTGTGAGAAAGCTTTCATACAGCGGCAGGACTTAATATCACACATCCGATGTCACACTGGTGAAAGGCCGTATACTTGTAATGTGTGTGGACAAGCTTTTAGGAAAACTGCAGCTTTGAAAGCTCATATCAAGATTCACGgataa
Protein Sequence: MEYDILFIDNICRTCLKEAPNFKPLLYKVDDEGRTICEVLSFVSNIDICISDKYPKQVCDTCQDNLLKADEFKKRCIQSETVLKVCFGRSELAASVKNENIPNSNNDRDFYQCALCLLKFSDGHALENHVACHRTFKEESPKRPDSSSEIIEGSSCQNNFPNATNNSEEDHLRELKQEAVDFDNDDLGIVFDDDNISYNPKPCQVEIEIPNYDCIKESKENIKTELQHECEICKKQFDSKKALQRHLNLHMTISPKYEYECSLCTRKFQKKASLVTHLKIHEERDKIRFMCPTCRREFQHQAHLDKHILSVHQKKVEFACDRCSKWFSTQKGLESHQESHNIEKRHQCNTCGKAFYMLSTLTDHLRTHTGEKPYLCSVCGKGFSQKTNLQQHTKRHFGIKKFKCDQCERGFVSKGELVAHARKHSGAHPFICDECGNGFTTSSSLVKHRRTHTGERPYACDLCPMKFSVSGTLKNHRRTHTGEKPYQCSHCEKAFIQRQDLISHIRCHTGERPYTCNVCGQAFRKTAALKAHIKIHG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00925963;
90% Identity: iTF_00925963;
80% Identity: -