Lphl004429.1
Basic Information
- Insect
- Lycaena phlaeas
- Gene Symbol
- -
- Assembly
- GCA_905333005.1
- Location
- HG995172.1:12909654-12920986[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.013 1.1 10.4 0.6 3 23 216 237 215 237 0.90 2 23 0.033 2.7 9.1 0.6 1 22 611 632 611 632 0.95 3 23 5 4.1e+02 2.3 0.3 1 22 674 695 674 697 0.82 4 23 0.0032 0.27 12.3 0.4 3 21 708 726 706 727 0.94 5 23 0.34 28 5.9 0.0 3 23 736 757 734 757 0.89 6 23 0.0035 0.29 12.2 0.4 3 23 777 798 775 798 0.97 7 23 0.00076 0.063 14.3 2.1 1 23 804 827 804 827 0.95 8 23 0.093 7.7 7.7 0.0 1 23 852 875 852 875 0.90 9 23 0.014 1.2 10.3 3.4 1 23 880 902 880 902 0.97 10 23 0.095 7.9 7.7 0.1 1 23 908 931 908 931 0.95 11 23 0.00019 0.016 16.2 0.8 1 23 944 966 944 966 0.98 12 23 0.00013 0.011 16.7 1.8 1 23 1015 1038 1015 1038 0.97 13 23 0.0012 0.1 13.6 1.6 1 23 1105 1128 1105 1128 0.96 14 23 0.0015 0.13 13.4 1.5 2 23 1155 1177 1154 1177 0.95 15 23 0.065 5.4 8.2 0.1 2 23 1183 1205 1182 1205 0.93 16 23 0.0063 0.52 11.4 0.2 1 21 1252 1272 1252 1273 0.95 17 23 0.00092 0.076 14.0 0.6 1 23 1283 1305 1283 1305 0.93 18 23 6.6e-05 0.0054 17.6 0.3 2 23 1398 1420 1398 1420 0.93 19 23 1.3e-07 1.1e-05 26.1 1.1 3 23 1427 1447 1426 1447 0.98 20 23 0.00068 0.056 14.4 0.1 1 23 1465 1487 1465 1487 0.98 21 23 0.14 12 7.1 0.0 1 23 1508 1530 1508 1530 0.97 22 23 0.002 0.17 12.9 0.4 1 23 1536 1559 1536 1559 0.96 23 23 0.00023 0.019 15.9 0.7 1 23 1567 1590 1567 1590 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGGATTATGATCGTGTTTGTAGACTTTGCTTAGCATCCGAATGCGAGTTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCTTGTCCTCGCTTCAAAAATCAAAGATTGTGTCTCCGTTCAGATTGAAGAAAATGACAACCTGCCAAGCAATGTTTGTAAGAAATGTAATGATAATGTCAACAACTGGCACATATTTAAGGGTGTTTGTGAAAGAACACAAAATAAATTACTAAATTTAAATAATAAGGACAGCAGCCAACTAGAAGAGTTGAATGTTAAAAGTGAATTTTTAACAGATGAGGCATATGAAGATGGAGTAGTCATTGATGGCTCATATCCTGATAGTGAGAATGCAGATTCTTCAAGTAAATTACAACCGGAAGGCCCACCTATTTTGACTTCCTTGGGACTTACACCGAGGAGTGATAAGGGCATGGACAGTGATAAAGACGAAAATGAGGCTGATGAGCCCGAAGAGCCTGAAGAAGACGAAGATGAAGAAATGAGTGAGCATAAAACCTATGCTGATATACCTAACATGCCCGAAGTGTCCATAACGGTGATGCGACCTTCCGGTGAGACCTTGCATGCGAGGCAGGGCATTCAGCAACTAGCTTCCAAGGATTGCTTAGTATGTGGCCGCAGTTACAGATACTCACATAACGCTAGACGACACGAATTAGGTGCACATAATTTTGATAGGTACACAAATAATGTCTCAGCAAAGAAATTGAACCTGCAACCCAAGTTAAGGCCGAATCCATTTAACCCAAAGGCAAGACTCATGCCAAACCCTATTAGTCATAAAATCAATCAATACATGGGGAAATCGTTACAATCAAAGATAATGCCACAGAAGATCATCGCGTGTCCAAAACCGATACCGATTAAAAACGCGAAACCCAACCAAAATAATTTACCTTATCCACTTAGGATTAAAGCTTTAAAAGATTTGCAAATAAAGAAAAAAGAACCTCAGATACTCAAAACCCTACTCACATCGAAACCAGAAGTTTTAGTTTCGGAACCCGAAATCCACAACTCTGGCCCCGAAAGCCCGGAAACGTTGATTTCCGAACCAGAAATAGCGTCGTTTGCTGTCGAGACGATTCTGTCTGAACCGGACGGCTTTGTGCATCAACCCGACGATTATGATGACTGTGACGAGCAAAATAATCGCGGCAATAATTATGATACAGTCGATATGGAGTCTGACAACGAAATAGAAATAGCTCGTCAACAACAAGATGAAAATTATCAAAATGACAATGATCAGAATGACGATAACACGAAGGATGAGTACAACGAAAATGATGATTCCAATAAAAAGGGCGATGATGACATGAGGGTCGACAAAGACGTTAAAAAAGAAAATATAGAGAATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACCTCCCATAGCGCCTGTAGTGGAAATAAATGAAGAAGTGATTAATTCCTTTAACAGCGAGCCGAATGAAGAAGACTACCTTGACGAGACAGTAGATCCCAATGAACCGATGGAAGGGGAAGGTAAAGAGGAAGCACTAGATCCTAACAAAATGTATGTAACAAAAGCTCAAAGGGATTTTATTCTCAAATACCGAGACGTAATTGAGCAAATAAACACAATGACATGCCTGTGTTGTAAAAGAGAACATCCTAGAAGGAAAGCTGTTATTCAGCATTTGCAAAAGAATGGACATAAGGTACCCAAGCATACGTGTTACAACTGTGTCGTAACCTTCAGTCATATAGGCGCGTTACTTAGTCATATGCGCTCAAACTCGTGTACAGATTTGTGGAAAATTATCTATAATGAGAATGGAATCACCGATGACTTGGTGTTAGAGGATGAACCGAAAGACAACAAAGTCACGTATAAGGACATATTCAATGCTAGATCATATGCATGTAAATTATGCCCTGCAAAGTTCCAGTTGAAACAGTTTATAATGAAACACGTTTTAGACGTACACGAGGATGGCCAATCGAGGATCCAACTAGCGTGTGTACACTGCGGGTCTAGATTCAAAGACAAAGCTCTATGGAAGAAGCACATACGCAACGGAGAGTGTACTGTGTACATCGCATGTGACTTGTGTTCCGAAACATTTATAACCATGCAAGAATTTAATGATCATGCATTAGCTGTTCACGCGGGCAGCTTCGATCCGGACAATCAAAATAAATGTGTCGACGGTCGACCCACAGACTGTCCCACTTGCGGAAAGAAAAATAGTACGTATCCGAACTTGGTGAAGCATTTAAAAACCATCCATAACGAAGATCGACCGCACTACTGCCAACATTGCGATGCTAAATTTAAGGAAGCGGCTGACCTCAATAAGCACATATACATGGAGCATTCTGACCGAACACTGAGAGTGCAGAATGAGCCGGACATGTCACTAGTCAAAGAAGAAGCGGAAGAATATCATTATTCATGTACAGAGTGTAACGCAATATTTGAAACTGTAGACGCGTGGACTGATCATCAAGTGGCTGAACACAATCAGATAGCTCATCACTGTGATCAGTGCGAGAAGAAATTCTTGAGGCCGTCAGAGCTGGCCGAACATAAGAACACACACTTGCGTGTTAAGTTCTATCCCTGTAGCGTGTGTGCCAATTCATACAGCACAGCTCAAAAGTTGTCTGAACACGTACAACAGGCTCATCCCGGCACGAATGCGCTAGTATCTGGGGATAACGAATTTTACTGTGATATCTGTGTCAGAGGCTTCAAAAGCCGACAAGCCTATTCCAACCATATGCGTATACACGCCAGAGTACCAACAACTAATAGGAGACCAGTGGACCCGAAGAGCTTTGCACCACAAATTATCGGAAAGCCGATCCTACAATATCCAATGATGCAGCAAGGATTCGGCAATTTTAAGACCAATTGTAATGTTCCTAACGCACCTTATTCGTGTGACATTTGCGGCAAAGGTTTTATGCACAAGAAAAACATATGGAAACACAAAAAGGTGCTACATGCCGATATCGTTGACAGAAATGATAGCGAAGAGAACACGATGCACGCGTCGACGGAAGAGGACGAATATAATGTCGACGAAAACGGTGCCATGTTATCAACTCCACAATTCGATAGCTTCAATTTTTCAAATTTACCCATCATAACCAATCACAATCAACATCAACCTCCCGCTCACCAGATACCTCAAGAAATGCCCTTCTCGTGTGATCTGTGCTCCAAAAGGTTCCCCCTTAAAACGAGTCTATGGAAGCACAAACGCGCGAAACATGGAATCATCAATGCCAGTGCTATGGATACACCAGAAATTCTACAAGCTTCTGGAAGCGAAGGGGGTGGAGGTAGATCGAGTTGTACTATTTGCAAGATAACATTCGCAGATAAGAAATCCTACTATCGCCATAGAAAGAATGTGCACAAGTCAACAGTACAAATGTGTAAAATATGCGGCAAACCTCTCAATTCGACATTGGAACTGTACGAGCACTTGAAAGCCGCTCATGCTAGGGAGCTCCTGGGCTACACCGCCAATCAAGGTTCCAGTAAAAGAACCAAACAGGAACAGGAGTACGTGCAAGAAGATGCTGAGTACGACGGTGACCAGGAACCAGCCGACCCCAGCATCGAGTATCAGGCCCATTACCCATGCAACACTTGCGGCAAACAGTTTATAGGACTGCTCGCCCTGCAGAATCACCAGTGCATCAATCAGCTCCAGTCCCAACCGCAGACGTTCGACTGCGAAATATGTCACAAGAGTTACACATCGATTGCTGCCCTCAAGAGCCATCGGGGATGGCATTTGAGATCCCCCGACGGTAAAGCGGCAGCGAATAACTCTGGACTGTGGATGCCCCACACGAAAGTGACCAATAAAGTGAGCAAATTCGAGGTTCTCGATGCGGCCCAACTCGCTAAAGTCTCGCACTCTACTAATTTGTCACCGGCGGCCATCGCAAAGCGGAGGCTACCCCCAGAGGTTGAAGTCACCGTTGTAAATCCAAACAAGAAGATGCGGTCGGACGACTCATTAGAATTAGACCAACAGAATAGCACGTCCGTCAGCGCGGACGATAGGTACTGCAATATCTGCGACAAAGAATTCACGAAACGAGCTGCCTACCAGCGACATATGGATGAAGTGCATCAACCCAACTCCGTGTTCTGTCCGGTCTGCGACAAGAGTTTCACGAGAAAATCGACGCTGATTGTCCACATGAAGAAGCATTATGAGGGCGAGGAAGGCACATCTAGTGCTTCGATCCAAGACGACGGTTGCTTCTCTTGTGATATATGTGGTATTCAGTTCGAAACTGACGCAGAATTGACGTCCCACCGGGAAATGCATGGCGACGAATCAGCCGAATCTGATGACGAAGGGAGTGTGCCCATCCAACAACCTGGTGAGTTCACGTGTGCCCAGTGTGGGGACGGCGTGGCGACACCCCGTGATCTCATCGCCCACCGAGCCATGCACTCGACACCGACAAAGTTCTACTGCAACATTTGCAAAGTATACTTCGCGAGAGCCGTCGACTTGTCCACTCACACTCGAGCGAGACACGCTGATAATGAAAAGGTGTTTTTCCCCTGTGCCATGTGCGACCGATTTTATATGAATAAAAAGAGTTTACAAAGGCACATTGAAATGTCACATTGA
- Protein Sequence
- MSVDYDRVCRLCLASECELLPIFPTTSSDDSEPLVLASKIKDCVSVQIEENDNLPSNVCKKCNDNVNNWHIFKGVCERTQNKLLNLNNKDSSQLEELNVKSEFLTDEAYEDGVVIDGSYPDSENADSSSKLQPEGPPILTSLGLTPRSDKGMDSDKDENEADEPEEPEEDEDEEMSEHKTYADIPNMPEVSITVMRPSGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELGAHNFDRYTNNVSAKKLNLQPKLRPNPFNPKARLMPNPISHKINQYMGKSLQSKIMPQKIIACPKPIPIKNAKPNQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIHNSGPESPETLISEPEIASFAVETILSEPDGFVHQPDDYDDCDEQNNRGNNYDTVDMESDNEIEIARQQQDENYQNDNDQNDDNTKDEYNENDDSNKKGDDDMRVDKDVKKENIENFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPPIAPVVEINEEVINSFNSEPNEEDYLDETVDPNEPMEGEGKEEALDPNKMYVTKAQRDFILKYRDVIEQINTMTCLCCKREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNSCTDLWKIIYNENGITDDLVLEDEPKDNKVTYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRIQLACVHCGSRFKDKALWKKHIRNGECTVYIACDLCSETFITMQEFNDHALAVHAGSFDPDNQNKCVDGRPTDCPTCGKKNSTYPNLVKHLKTIHNEDRPHYCQHCDAKFKEAADLNKHIYMEHSDRTLRVQNEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCANSYSTAQKLSEHVQQAHPGTNALVSGDNEFYCDICVRGFKSRQAYSNHMRIHARVPTTNRRPVDPKSFAPQIIGKPILQYPMMQQGFGNFKTNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADIVDRNDSEENTMHASTEEDEYNVDENGAMLSTPQFDSFNFSNLPIITNHNQHQPPAHQIPQEMPFSCDLCSKRFPLKTSLWKHKRAKHGIINASAMDTPEILQASGSEGGGGRSSCTICKITFADKKSYYRHRKNVHKSTVQMCKICGKPLNSTLELYEHLKAAHARELLGYTANQGSSKRTKQEQEYVQEDAEYDGDQEPADPSIEYQAHYPCNTCGKQFIGLLALQNHQCINQLQSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPHTKVTNKVSKFEVLDAAQLAKVSHSTNLSPAAIAKRRLPPEVEVTVVNPNKKMRSDDSLELDQQNSTSVSADDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGEEGTSSASIQDDGCFSCDICGIQFETDAELTSHREMHGDESAESDDEGSVPIQQPGEFTCAQCGDGVATPRDLIAHRAMHSTPTKFYCNICKVYFARAVDLSTHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00688027;
- 90% Identity
- -
- 80% Identity
- -