Lphl023232.1
Basic Information
- Insect
- Lycaena phlaeas
- Gene Symbol
- ham
- Assembly
- GCA_905333005.1
- Location
- HG995181.1:9127063-9139942[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.041 51 4.5 0.0 5 43 51 86 47 87 0.86 2 8 0.029 37 5.0 1.3 17 43 122 145 90 146 0.78 3 8 0.2 2.5e+02 2.3 0.2 19 38 153 169 150 174 0.87 4 8 0.87 1.1e+03 0.3 5.0 4 43 167 201 164 202 0.78 5 8 0.71 8.9e+02 0.6 4.3 2 28 193 219 192 226 0.81 6 8 2.8e-05 0.035 14.6 0.1 18 41 623 643 608 645 0.87 7 8 3.7e-05 0.047 14.3 2.2 17 44 650 674 644 674 0.88 8 8 1 1.3e+03 0.0 0.4 19 41 681 700 675 701 0.72
Sequence Information
- Coding Sequence
- ATGTTATCAGCTTATCCTCGCCGCCGCTCGACTTATCACGTCGTTAGACAATGCTCGGGGCGTGGTTTCGCTTGTCGTGACCTGAATACTGTCAATATATCGATGCGTGCTCGTCGTGAAACGTCAAGCGTGAACTCCTCAAGTGTCTCCCAGCACGCTGAAGACGAGGAGCGAGAGGATACGGAACCCAGATGCTCCTTCTGCGAAGCTCCCTTTCCTAATATTGACGCGCTCGATCGCCACCTGATTCAAGCACACGGTCAGCCGGCATCAGCGTTCCACTGCGAGCTCTGCAACCGCGCCTACAGCTCCCGCGCCCTCCTCCTCAGGCACCGCGCACTCACGCACACAGACATCAGGAAATACCCCTGCGAGAACTGCCCCAAGGTATTTACCGATCCTTCCAACCTGCAGCGCCACATCCGCGCGGCGCACGTCGGAGCCCGCAGCCACGCCTGCCCGGAGTGCGGAAAGACCTTCGCCACCTCATCCGGCCTCAAGCAGCACACGCACATCCACTCCAGCGTCAAACCCTTCCAGTGCAAAGTTTGCTTTAAGGCATACACGCAGTTTTCAAATTTGTGCCGACACAAACGGATGCACAGCGCGTGTAGAGCCCTGGTCGAGTGCGGAAAATGCGGACAATCGTTCACATCTTATGCGTCTCTGACTAAACACAAGAGGTTCTGCGATACAGCCGCCGCAGCTAACGTGAATCTTCGTGGACAGTTGCAACAGGGTCTATCTCAGATACCACCGCTCCCTAACGTCATGAATACTAACAACGCTACACCCTTCCCCATGTACAGGGGACCTGGTCTACCACTGCCTTACAACACCTTTGCTCACTACCCAGCGCTATTTTCTGCAGCCGCGGCCGCTTGTCCACCAGATTTCCTTAGTCCTTTACTCTTCAATGTCCAAGGTGCAAGATTGGCAATGGAACATGACATTGCCCTCAATGCAAATTTGATTTCAAAAATGTCTGTAAAAAATATGGATAGCGCAAATTCTGCCGATAATAATAAAAAGGATATGGAAATTGACATCGACAATGTTAAATCGGATAGCAATAGTGAAAGAATGACGCCGAAGCCACAGAGTGCTTACGTAAAACAATCTCCGCCATCTGCTGAGGAAGCATCATCACGCCCATCTCCAGTTATGCCGCTGTCCTCGACGATCCCTTCATTCAATTTTGCAAAAGATGAAACAAATCACAACTCTCCATTCAACTTGTCATTGAAACTCAACAATAATGAAGTATCAGCAAACAGTTCAGATTCGACAACTATTCCGAGAGATTTAACCAAAAGTTACAGTAACGACATAGACAAGAAGTCAGTGTACTCTGACGCCGAACTAGAAGCTAAAAAAGAACAGAACGATCAACCGCTCGACTTGTCAGTGTCGAGAAAGCAATGCGACAAAGACTCAGATATGGAAAACGATGATCACTCTTTTCGTAATTCTTCAGTAAAATCCTATTCACCACCAGAGAGTCCCATGGAACGGGACTCTAAGACTCCAGAAAACGAAACGACTGACGTGGACGTAGAAGGAGTGGAACCGAAGAGAGATGATTCTCCACATCAACTAGTATCGCCACCACTAGCATTTCCGATGCCAGTTCACCCGCAGCACAACAACAGTCTCATCGAAGCAATGTATCGACCACGTTTTCCATCTTTCCATAGTCACACTACAACAGATGCAATGCTAAACCCGTCTCACTCACCATACGTTCCCAGTCCGTTTAATTTTTTATCCCCTCTACTCGGTACTGACGGTCCCGATAGGCAACCAAACGCCTACGCAAAGTTTCGCGAACTCAGTGCCGGGTCGGGAAAATTGAGGGACCGCTACGCCTGCAAATTTTGCGGAAAAGTATTCCCTAGAAGTGCAAACTTGACTAGGCATTTGCGGACTCACACGGGCGAGCAGCCGTACAAATGCAAGTATTGTGAGCGATCTTTCTCAATATCCTCGAACTTGCAACGCCACGTGAGGAACATTCACAATAAGGAGCGCCCGTTCCGCTGTCCATTATGCGACAGATGCTTCGGCCAGCAAACTAATCTGGATCGACATTTGAAGAAGCACGAAGCGGAAGGTGGGGACTCCCCGAGCTCTGCGGATACGGAACAAGACGCGTGCTTTGATGACATTCGCTCATTTATGGGAAAGGTGACCTGCTCTCCCGGGTCGCGGACTCCTCCTGCGAGTTCGCCTCATGCTCCCCTTTCCCACCCCTCTCACCCCTCACACGCATCCCACCCCTCACACAGACCTTCAGCGTTAGCCATATCAACATAG
- Protein Sequence
- MLSAYPRRRSTYHVVRQCSGRGFACRDLNTVNISMRARRETSSVNSSSVSQHAEDEEREDTEPRCSFCEAPFPNIDALDRHLIQAHGQPASAFHCELCNRAYSSRALLLRHRALTHTDIRKYPCENCPKVFTDPSNLQRHIRAAHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHSACRALVECGKCGQSFTSYASLTKHKRFCDTAAAANVNLRGQLQQGLSQIPPLPNVMNTNNATPFPMYRGPGLPLPYNTFAHYPALFSAAAAACPPDFLSPLLFNVQGARLAMEHDIALNANLISKMSVKNMDSANSADNNKKDMEIDIDNVKSDSNSERMTPKPQSAYVKQSPPSAEEASSRPSPVMPLSSTIPSFNFAKDETNHNSPFNLSLKLNNNEVSANSSDSTTIPRDLTKSYSNDIDKKSVYSDAELEAKKEQNDQPLDLSVSRKQCDKDSDMENDDHSFRNSSVKSYSPPESPMERDSKTPENETTDVDVEGVEPKRDDSPHQLVSPPLAFPMPVHPQHNNSLIEAMYRPRFPSFHSHTTTDAMLNPSHSPYVPSPFNFLSPLLGTDGPDRQPNAYAKFRELSAGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEQDACFDDIRSFMGKVTCSPGSRTPPASSPHAPLSHPSHPSHASHPSHRPSALAIST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00943055;
- 90% Identity
- iTF_00787011; iTF_00925966; iTF_00786997;
- 80% Identity
- iTF_00925966;