Basic Information

Insect: Helleia helle
Gene Symbol: ham
Assembly: GCA_963853865.1
Location: OY971432.1:7400830-7413141[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.069 62 4.6 0.0 5 43 23 58 19 59 0.86

2 9 0.61 5.5e+02 1.6 0.3 18 29 66 77 62 89 0.80

3 9 0.028 25 5.9 0.1 18 43 95 117 82 118 0.84

4 9 0.34 3.1e+02 2.4 0.2 19 38 125 141 122 146 0.87

5 9 1.5 1.3e+03 0.3 5.0 4 43 139 173 136 174 0.78

6 9 1.2 1.1e+03 0.7 4.3 2 28 165 191 164 198 0.81

7 9 4.8e-05 0.043 14.7 0.1 18 41 595 615 580 617 0.87

8 9 6.4e-05 0.057 14.3 2.2 17 44 622 646 616 646 0.88

9 9 1.8 1.6e+03 0.1 0.4 19 41 653 672 647 673 0.72

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.069	62	4.6	0.0	5	43	23	58	19	59	0.86
2	9	0.61	5.5e+02	1.6	0.3	18	29	66	77	62	89	0.80
3	9	0.028	25	5.9	0.1	18	43	95	117	82	118	0.84
4	9	0.34	3.1e+02	2.4	0.2	19	38	125	141	122	146	0.87
5	9	1.5	1.3e+03	0.3	5.0	4	43	139	173	136	174	0.78
6	9	1.2	1.1e+03	0.7	4.3	2	28	165	191	164	198	0.81
7	9	4.8e-05	0.043	14.7	0.1	18	41	595	615	580	617	0.87
8	9	6.4e-05	0.057	14.3	2.2	17	44	622	646	616	646	0.88
9	9	1.8	1.6e+03	0.1	0.4	19	41	653	672	647	673	0.72

Sequence Information

Coding Sequence: atgcTAAATTGTAAATTGTACGTTACAGGTCGTGAAACGTCTAGTGTGAACTCCTCAAGTGTGTCCCAGCACGCCGAAGACGAGGAGCGAGAGGATACGGAACCCAGgtgctccttctgcgaggctCCCTTCCCTAACATTGACGCGCTCGATCGTCACTTGATCCAAGCTCACGGACAGCCGGCATCAGCGTTCCACTGCGAGCTCTGCAACCGCGCCTACAGCTCCCGCGCCCTCCTCCTCAGACACCGCGccctcacgcacacagatatcAGGAAATACCCCTGCGAGAACTGCCCTAAGGTATTTACCGATCCTTCCAACCTGCAGCGCCACATCCGCGCGGCGCACGTCGGTGCTCGCAGCCACGCCTGCCCCGAGTGCGGAAAGACCTTCGCCACCTCCTCCGGCCTCAAGCAGCACACGCACATCCACTCCAGCGTCAAACCCTTCCAGTGCAAAGTCTGCTTTAAggCATACACACAGTTTTCAAATTTGTGCCGACACAAACGGATGCACAGCGCGTGTAGAGCCCTGGTCGAGTGTGGAAAATGCGGACAATCGTTCACATCTTACGCGTCTCTGACTAAACACAAGAGGTTCTGCGATACAGCCGCCGCAGCCAACGTCAATCTTCGTGGACAATTGCAACAGGGACTATCTCAGATACCACCGCTACCTAACGTCATGAATACTAACAACACTACACCCTTCCCCATGTACAGGGGACCTGGGCTACCATTGCCTTACAATACCTTTGCACACTACCCAGCGCTATTTTCTGCAGCCGCGGCCGCTTGTCCACCAGATTTCCTAAGTCCGTTACTCTTCAATGTCCAAGGTGCAAGATTGGCAATGGAACATGACATTGCCCTCAATGCAAATTTGATTTCAAAAATGTCTGTCAAAAATATGGATAACGTCAATtctgttgataataataaaaaagatatggATATTGACATCGAAAACGTTAAATCGGATAGCAATAATGAAAGAATGACGCCAAAGCCGCAGAGTGTTTACGTAAAACAATCTCCGCCATCTGCCGAGGAAGCATCATCACGTCCATCTCCAGTTATGCCGTTGTCCTCGACGATCCCTTCATACAATTTTGCAAAGGATGAAACAAATCATAATTCTCCATTTAATTTGTCATTAAAACTCAACAATAATGAAGTTTCAGCAAATTGTTCAGATttaacagctgttccgaaagaTTTAACGAAAAATTACAATAACGACGTAGACAAAAAGTCAGTGTACTCCGATGCCGAGCAAGATGCTAAAAAAGAACAGAACGATCAACCACTTGACTTATCAGTGTCGAGAAAGCAATGTGACAAGGACTCCGATATGGAAAATGATAATCTGTCTTTTCGTAATTCTTCAGTAAAATCTTATTCACCACCAGAGAGTCCAATGGAACGGGACTCTAAAACTCCAGAAAACGAAACGACTGATGTGGACGTAGAAGAAGTGGAACCGAAGAGAGATGATTCTCCACATCAACTTGTATCGCCACCACTAGCATTTCCGATGCCAGTTCACCCGCAGCACAACAACAGTCTCATCGAAGCAATGTACCGACCACGTTTTCCATCTTTCCACAGCCACACCACAACAGACGCGATGCTAAACTCGTCCCACTCGCCATACGTTCCCAGTCCGTTTAAttttttatcccctcttctcgGTACTGACGGTCCCGATAGGCAACCCAACGCTTACGCAAAGTTTCGCGAACTCAGTGCCGGGTCGGGAAAATTGAGGGACCGCTACGCATGCAAATTTTGCGGAAAAGTATTCCCTAGAAGTGCAAACTTGACTAGGCATTTACGGACCCACACGGGTGAGCAGCCGTATAAATGCAAGTATTGTGAGCGATCGTTTTCAATATCCTCGAACTTGCAGCGCCACGTGAGGAACATACACAACAAGGAGCGGCCATTCCGTTGTCCACTTTGCGACAGATGCTTCGGCCAGCAAACTAATTTGGATCGACATCTGAAAAAGCACGAAGCGGAGGGTGGGGACTCCCCGAGTTCTGCGGATACAGAGCAAGATGCGTGCTTTGATGACATTCGCTCATTTATGGGAAAGGTGACCTGCTCTCCCGGGTCACGAACTCCGCCTGCGAATTCACCTCATGCTAACCTTCCCCACCCCTCCCATCCCTCCCACCCCTCACATGCATCCCACCCCTCACACAGACCTTCAGCTTTAGCCATATCTACATAG
Protein Sequence: MLNCKLYVTGRETSSVNSSSVSQHAEDEEREDTEPRCSFCEAPFPNIDALDRHLIQAHGQPASAFHCELCNRAYSSRALLLRHRALTHTDIRKYPCENCPKVFTDPSNLQRHIRAAHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHSACRALVECGKCGQSFTSYASLTKHKRFCDTAAAANVNLRGQLQQGLSQIPPLPNVMNTNNTTPFPMYRGPGLPLPYNTFAHYPALFSAAAAACPPDFLSPLLFNVQGARLAMEHDIALNANLISKMSVKNMDNVNSVDNNKKDMDIDIENVKSDSNNERMTPKPQSVYVKQSPPSAEEASSRPSPVMPLSSTIPSYNFAKDETNHNSPFNLSLKLNNNEVSANCSDLTAVPKDLTKNYNNDVDKKSVYSDAEQDAKKEQNDQPLDLSVSRKQCDKDSDMENDNLSFRNSSVKSYSPPESPMERDSKTPENETTDVDVEEVEPKRDDSPHQLVSPPLAFPMPVHPQHNNSLIEAMYRPRFPSFHSHTTTDAMLNSSHSPYVPSPFNFLSPLLGTDGPDRQPNAYAKFRELSAGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEQDACFDDIRSFMGKVTCSPGSRTPPANSPHANLPHPSHPSHPSHASHPSHRPSALAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00943055;
90% Identity: iTF_00925922;
80% Identity: iTF_00787011;