Lnic027413.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Luperina nickerlii
Gene Symbol
ham
Assembly
GCA_963855955.1
Location
OY979681.1:8179874-8226248[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.039 4.3 9.2 0.0 2 23 260 282 259 282 0.96
2 9 0.0011 0.12 14.1 0.8 1 23 289 312 289 312 0.93
3 9 2.3e-08 2.5e-06 28.8 0.1 1 23 318 341 318 341 0.96
4 9 2e-06 0.00022 22.7 1.7 1 23 347 369 347 369 0.95
5 9 6.9e-05 0.0077 17.8 6.1 1 23 375 397 375 397 0.99
6 9 0.00014 0.016 16.9 0.4 2 21 405 424 404 425 0.94
7 9 1.7e-08 1.8e-06 29.2 0.7 1 23 822 844 822 844 0.98
8 9 6e-07 6.7e-05 24.3 1.7 1 23 850 873 850 873 0.97
9 9 2.2e-05 0.0025 19.4 3.2 1 23 879 901 879 901 0.98

Sequence Information

Coding Sequence
ATGCTGAATTTTGATACGAGTTACAGAATGAAGATGTCTGCAGCAGACAGCCAAGAGTCTGGCAGTCCACCGCCGAGCCCGGCTGACTCTGCCACATCAGAATCAGCGCCCACCTTAGTCCACATCAAGCAAGAAAACATGCCTCCAGGAACAGATGTTAAGGAGTACTACGGTACTCTAGACTTTGGGCTATCAGACACATACCTAGCCAATAAATTCCCCGACTATGGAAGAGGATACTTACCTAGACCTCTAGATCACTCAAAGTCGGTCAAAAATGAGGATGGGACGAAATATGATGATCTAGATGTAATTAGAAGGATAGAGGATATAGATTTAATtctacaacaacattcattgatgTTTAAAAGTGGAGGGATATTTGCTACAGTGAATATTGCTAATGGAACTCAATATGGACCCTTTCTGGGATTGTTGGAGAATCAGCCGAAGGACAGGCGATTTGCTTGGGAGgtCCGTGACAAGAATGGCGTCAGTGGCTGGCTGGACGCCACTTCAGAGAAGAGCAACTGGCTCAAAATGGTGCGCTCCACCAACTACCCACATGATGTTAACGTACAACCTCTTTTGTTGGCTGGACAGGTCTGGTACAAGGTTGTCCGGGAGGTACCCTCCGGCCAAGAGTTGCTGCTGGGTCCTCGGACACCCATCTACTTAGATGACATACTCTCTTTGGACTCAAAGCGTCAGTCATCTATTGATAAGTTCAGCTCTCTGGCATCAGCTGACGACGAAGAACGAGAGGACGCTGACATCCGCTGCAGCTTCTGTGATCTACCCTTCCCTAACATCGACGTTCTCGATCGGCACTTGATAACTGAGCACGCCCAGCCGGCCGCTGCATTTCATTGCGAACTCTGTAACAGAGCTTACAGCACTCGGGTACTGCTCCTGCGACACCGTGCGCTTGCGCATACAGACATCAGAAAGTACCCCTGCGAGAACTGTCCTAAGGTATTTACCGATCCTTCCAACCTTCAGCGCCACATTCGCGCGCAGCACGCGGGAGCCCGCAGCCACGCCTGTCCTGAATGCGGAAAGACCTTCGCGACTTCCTCCGGCCTGAAAcagcacacacacatacactccaGCGTCAAGCCCTTCCAGTGCAAGGTTTGCTTTAAGGCTTACACCCAGTTCTCAAACCTCTGCCGTCACAAGCGAATGCACGTTGCTTGCAGAGCTCTCGTTGAATGCGGAAAATGCGGTCAGTCCTTCACGTCTTACGCCTCTCTTACTAAACACAAGAGATTCTGTGACACCGCTGCCGCCGCTTCAGTCAACCTCCGAGGGCAAATACCCCAAGGTCTACCGCAAATACCGTCACTGCAAAACGTCGGGATGAATAACCCCAACAACACGAACCCGTTCCCGATGTACAGGGGTCCAACCCTGCCACTGCCATACAATACATTTGCTCACTACCCGGCGCTGTTCTCTGCTGCCGCTGCTGCTGCCTGCCCACCCGAGTTCCTTAGCCCATTGCTCTTTAACGTACAAGGAGCAAGACTCGCTATGGAACACGATATGGCCATGTCAAATGCTAATTTGGTATCCAAACAGCAGGAAGGCCGCCTATCAGTAAAAAGCATGGACAGCTCAAACTCTTTAGATGATAACAAGAAGCCTAAAGATTTGGATTTCGACAATAAACGAGACAGCTATAGTTCAGATAGGGCTACGCCCAATAAATCCCATAGTCTTTATTCGAAGCAATCGCCTCCTTCTGGGGAGGAAGCATCTTCTCAACGTCGACCGTCACCAGTCATGCCACTATCCACACCGATTACTCCATTCAGTTTCTCAAGAGATGAAATGAAACGCAAGTCTCCGTTCAACTTCTCTCTCAAACTCAATAATAATGACATTCAGGGTAACAAGTCTTTATCACCATTACCTAAAGACTTGTCCAAGAATGTCATCGACGACGATAAAAATTCTGAATATTCGGATGTCGAAGAAGATACAAAGAAAGATGAAGGTGACCAGCCTTTAGATCTATCTGTTTCAAGGAAACAAAACGATAAGGATTCTGAAGTAGAGAATGACGATCGTTCCTTTCGCCACTCAGTTAAGTCTTATTCACCTCCTGAAAGCCCAGCTGAGAGGAGCAAGACTCCTGAAAATGACACGACAGATGTCGATGTTGAAGGCGTAGAACCTAAGAGGGAGGAATCGCCACCGCAGCTAGTATCACCACCTTTGGCGTTCCCCATGCCCGTTCACCCGCAGCATAGCAACTTAATCGATGCCATGTACCGGCCTCGATTCCCATCGTTCCACACTTCCGAATCACTTCTGAACTCGTCGCACTCTCCTTATGTACCGAGTCCGTTCAATTTTTTATCCCCACTTCTCGGTACTGATGGACCAGATAGGCAACAAAGCGCGTATGCCAAGTTTCAAGAGCTTAGTTCAGGGTCTGGAAAGCTGCGTGATCGGTACGCTTGCAAGTTCTGTGGAAAAGTGTTCCCACGGAGTGCGAACCTGACTCGTCACCTACGTACACACACTGGCGAGCAACCCTACAAGTGCAAGTACTGTGAGCGCTCGTTCTCGATCTCCTCGAATCTTCAGCGGCACGTGAGGAATATTCACAACAAGGAGCGGCCATTTCGGTGTCCCTTGTGCGAAAGATGTTTCGGGCAGCAGACGAATCTCGATCGTCACTTGAAGAAGCACGAGGCGGAAGGTGGAGATTCTCCTAGCTCAGCGGACACTGAGAGGGAGGATGCGTATTTTGATGATATTCGGTCGTTCATGGGCAAAGTGACGTGTTCACCTGGCGCGCGGTCACCGGCAGCGACGCCCCCGCACGGCGCGCACGGGGCGCACGCCGCGCACGGCCCGCGCCCCTCTCTCGCTATCTCCACATAG
Protein Sequence
MLNFDTSYRMKMSAADSQESGSPPPSPADSATSESAPTLVHIKQENMPPGTDVKEYYGTLDFGLSDTYLANKFPDYGRGYLPRPLDHSKSVKNEDGTKYDDLDVIRRIEDIDLILQQHSLMFKSGGIFATVNIANGTQYGPFLGLLENQPKDRRFAWEVRDKNGVSGWLDATSEKSNWLKMVRSTNYPHDVNVQPLLLAGQVWYKVVREVPSGQELLLGPRTPIYLDDILSLDSKRQSSIDKFSSLASADDEEREDADIRCSFCDLPFPNIDVLDRHLITEHAQPAAAFHCELCNRAYSTRVLLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHAGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHVACRALVECGKCGQSFTSYASLTKHKRFCDTAAAASVNLRGQIPQGLPQIPSLQNVGMNNPNNTNPFPMYRGPTLPLPYNTFAHYPALFSAAAAAACPPEFLSPLLFNVQGARLAMEHDMAMSNANLVSKQQEGRLSVKSMDSSNSLDDNKKPKDLDFDNKRDSYSSDRATPNKSHSLYSKQSPPSGEEASSQRRPSPVMPLSTPITPFSFSRDEMKRKSPFNFSLKLNNNDIQGNKSLSPLPKDLSKNVIDDDKNSEYSDVEEDTKKDEGDQPLDLSVSRKQNDKDSEVENDDRSFRHSVKSYSPPESPAERSKTPENDTTDVDVEGVEPKREESPPQLVSPPLAFPMPVHPQHSNLIDAMYRPRFPSFHTSESLLNSSHSPYVPSPFNFLSPLLGTDGPDRQQSAYAKFQELSSGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCERCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPGARSPAATPPHGAHGAHAAHGPRPSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00441779;
90% Identity
iTF_00177403;
80% Identity
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