Lnic035264.1
Basic Information
- Insect
- Luperina nickerlii
- Gene Symbol
- -
- Assembly
- GCA_963855955.1
- Location
- OY979688.1:13874162-13876189[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-10 8.2e-08 33.0 0.1 2 38 16 52 15 58 0.89
Sequence Information
- Coding Sequence
- ATGGTACGAAATTATAAAAGAAAGACGACGAGGGGTGAGTGGTCTAAGGAAGCCATGAAAAAAGCAGTAGAAGATGTGTTGGCAAAAAAGTCAGGATATCGAAAAGCAGCCGCAACATACGGTGTTCCGCAAACCACTTTAGAGCGTTATGTCAATAAAGTAAAACAACGCAAGGAAGTAACGTTCGGCGAGCCATTAGGGcctataaaaaaagtatttagcGTTGTAGAAGAGGCAGAAATAGCGGGATATTTAAAACATATGGAAGAACGGCTATTCGGTTTAACTACTCTTGATCTCAGACGGATGGCATATGAGTTGGccgttagaaataataaaaaacataactttaataatgaaaaaaaaatggctggTAACACCTGGCTCAGAGGTTTCTTAGATCGCCATCCAAATTTATCTATTCGTAAGCCAGAAGCTACGTCCGCAGCTCGTGCAATGGGCTTCAACAGAATTGCTGTTGGAAAGTTTTACCAGTTACTCGGCGACATCTACGACCAACATAAATTAACACCGGACAAGATATACAACTGCGATGAGACTGGTATATCTGTTGTTTCGAAAACCAAGAGCAAAATAATAGCTGTGAAGGGACGAAAACAGGTCGGGTCATTGTCGTCAGCAGAGCGAGGTCAGACTGTCACAGTGGAAATTTGCTTTAATGCAGCCGGAAACTATATGCCACCACTCATGATATTTCCACGACAGCGCATGAAGGCTGAACTATTAGATCATGCTCCACCGGGAACAACAGCTGCCTGCAATCCACGAGGATGGATAACGACGGAAATATTTACGATCTGGTTCAAGCAATTTATTCAATTTTCAGGAGCTACTCTTGACAATAAAGTGCTGCTACTTCTTGACGGTCACGTAAGTCACACTCAAAATTTAGAGGTTATAGACATAGCTCGTCATAACGGAGTAATTATACTTTGCTTTCCTCCACACTGTACCCACAGACTGCAACCTGCAGATGTTACATTTATGAGGCCTTTGAGCACTTATTACGACCGTGCTGCTACTAACTGGTTACGATCGCACCCAGGCCGAGTGCTGACTATGTTTCAAATAAGTGAAATATTTGGACAAGCATATCTTCAGGCAGCTACTATGAACACGGCATTGAATGGCTTCAGTAAGTGTGGTATTTGGCCATACAATCAGGATAATTTTACAGATGTAGACTTTTTGCCTGCTGAAACAACCAACCGTGCAGTTAATGAAGACAGTCTGGCTACATCTGATGCCACCAATTTACCATTTTCGGACCTTCCCGCCGAGCGACATGCTGTTGTTGAGAACATTCCATCCACACTTAATGGTACTCCTGCAGAACCAGCACAGACTAATGAAAGGAATGCTCAACCTGACAACTATTCTCAACCTATTCATTTGCAAACAGGTTCTGAGATCAGTCTAATATCTTCACAAGATTACTGCACGCCTATCAAACCTGCAACTCCTAGTTATTGTATTTCACCCCAAGCCCAGCCAATAACTCCACTTGCTGTTGAACCTGAAACTGAACCAGAGCCTGGACCTTCATCTTTACATGCAGCACAAACTAGATCACCTGTTCGAGCAGTTTGCCGTGATCTCACGTCTAGTTTTAGTAATGCCTCTCCTAGTGACATCATAGCCATTCCAGCAGTTCAgtctaatgaaaaaagaaaacaataccGAAGGGGTAAAACCGCCATCATCACTTCCACTCCGTACAAAAAAGAAGTAGAGGAAAGAAAAAGACCTGCGAAACCAGCTGTTAATAATATCACGACTAAAAAGGCCAAAGGTAAAGGAAAAGGAAAAAAGAGGGTAACAGGAAAAGAAGCACAAGAAGATACAATTTGTTTATATTGCAATGATGAAAACAATTCTTATCAAAAATCGTCGGAAAACTGGGTAGGGTGTCAGCGGTGTAGTCGATGGGCCCACACAGCTTGTGCTGGAGTCGACGACGAAGATATGGAGGATGTCTTGATATGTATTTTCTGTGAAGATAATTAG
- Protein Sequence
- MVRNYKRKTTRGEWSKEAMKKAVEDVLAKKSGYRKAAATYGVPQTTLERYVNKVKQRKEVTFGEPLGPIKKVFSVVEEAEIAGYLKHMEERLFGLTTLDLRRMAYELAVRNNKKHNFNNEKKMAGNTWLRGFLDRHPNLSIRKPEATSAARAMGFNRIAVGKFYQLLGDIYDQHKLTPDKIYNCDETGISVVSKTKSKIIAVKGRKQVGSLSSAERGQTVTVEICFNAAGNYMPPLMIFPRQRMKAELLDHAPPGTTAACNPRGWITTEIFTIWFKQFIQFSGATLDNKVLLLLDGHVSHTQNLEVIDIARHNGVIILCFPPHCTHRLQPADVTFMRPLSTYYDRAATNWLRSHPGRVLTMFQISEIFGQAYLQAATMNTALNGFSKCGIWPYNQDNFTDVDFLPAETTNRAVNEDSLATSDATNLPFSDLPAERHAVVENIPSTLNGTPAEPAQTNERNAQPDNYSQPIHLQTGSEISLISSQDYCTPIKPATPSYCISPQAQPITPLAVEPETEPEPGPSSLHAAQTRSPVRAVCRDLTSSFSNASPSDIIAIPAVQSNEKRKQYRRGKTAIITSTPYKKEVEERKRPAKPAVNNITTKKAKGKGKGKKRVTGKEAQEDTICLYCNDENNSYQKSSENWVGCQRCSRWAHTACAGVDDEDMEDVLICIFCEDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01534723;
- 90% Identity
- iTF_01534723; iTF_00037709; iTF_00928589; iTF_00037712; iTF_00726227; iTF_00037717; iTF_00122294; iTF_00122293; iTF_01424983;
- 80% Identity
- -