Acre028644.1
Basic Information
- Insect
- Apamea crenata
- Gene Symbol
- -
- Assembly
- GCA_949629185.1
- Location
- OX451375.1:13973185-13975227[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.9e-12 4.1e-09 37.0 0.0 2 38 16 52 15 58 0.89
Sequence Information
- Coding Sequence
- ATGGtacgaaattataaaaaaaagacaaataggGGAGAGTGGTCTAAAGAAGCTATGAAAAAAGCAGTAGAAGATGTGTTGGCAAAAAAATCAGGATTTCGAAAAGCAGCTTCAACTTATGGTGTTCCGCAAACCACTTTAGAGCGTTATGTCAATAAAGTAAAACAAGGTAAGGAAGTAACCTTCAGCGAGCCATTAGGGcctataaaaaaagtatttagcGTTGAAGAAGAGGCAGAAATAGCGGGATATTTAAAACATATGGAAGAACGGCTATTCGGTTTAACTACTCTTGATCTCAGACGGATGGCATATGAGTTGGctgttagaaataataaaaaacataactttaacaatgaaaaaaaaatggcaggtAACGCCTGGCTCAGAGGTTTCTTAGATCGCCAGCCAAATTTATCTATTCGTAAGCCAGAAGCTACGTCCGCAGCTCGTGCAATGGGATTTAATAGAGTTGCTGTTGGAAAGTTTTACCAGTTACTCGGCGACATCTATGACCAACATAAATTAACACCGGACAAGATATTTAACTGCGATGAAACCGGCATATCTGTTGTTTCGAAAactaaaagcaaaataatagcTGTGAAGGGAAGAAAACAAGTCGGCTCATTGTCATCAGCAGAACGAGGCCAGACTGTCACAGTGGAAATTTGCTTTAATGCAGCTGGAAACTATATGCCACCACTCATGATATTTCCACGACAGCGCATGAAAGCTGAACTATTAGATCATGCTCCACCGGGGACAACAGCTGCCTGCAATCCACGAGGATGGATAACCACGGAAATATTTACGATCTGGTTCAAGCAATTTATTCAATTTTCAGGAGCTTCTCTTGACAATAAAGTGCTGCTACTTCTTGACGGTCATGTAAGTCATACCCAAAATTTAGAAGTTATAGACATAGCTCGTCAAAACGGAGTAATTATACTTTGCTTTCCTCCACACTGTACCCACAGGCTGCAGCCTGCAGATGTTACATTTATGAGGCCTTTGAGCACTTATTACGACCATGCTGCTACCAACTGGTTACGATCGCACCCAGGCCGAGTGCTGACCATGTTTCAAATAAGCGAAATATTTGGACAAGCATATCTTCAGGCAGCCACTATGAACACGGCATTGAATGGTTTCAGGAAGTGTGGTATATGGCCATTCAATCAGGACAATTTTACTGATGTCGATTTTTTGCCTGCTGAAACAACCAACCGTCCAGTTAATGAAGACACTCCAGCTACATCTGATGCCATCAATTTACCATTTTCGGACCTTTCTACCGAGCGACATGCTGTTATTGAGGACAGTCCATCCACAACTAATGGTACTCCTGCAGAACCAGCACAGACTAATGGAAGGAATGCTCAACTTGACAGCAATTCTCGACCTATTTGTTTGCAAACACGTTCTGAGATCAGTCTAATATCTTCACAAGATTACTGCACGCCTACTAAGCCTGCAACTCCTAGTTCTTCTATTTCACCTCAAGCCCAGCTAATAACCCCACTTGCTGTTGAACCTGAAACTGAACCAGAGCCTGGACCTTCATCTTTACATGCAGCACAAACTAGATCTCCTGTTCGAGCAGTTTGCCGTGATCTCACGTCTAGTTTTAGTAATGCCTCTCCTAGTGATATCATACCCATACCAGCAGTTCAGTcttatgaaaaaagaaaacaataccgAAGGGGTAAAACCGCCATCATCACTTCCACTCCGtataaaaaagaagtagaagaaagaaaaagacctGCGAAACTAGTAGTTgataatactactactactaaaacTAAGAAGGCCAAAGGTAAAGGTAAAGGCAAAGGAAACAAGGGGGTAACTGGAAAAGAATCACAAGAAGATACAATTTGTTTATATTGCAATGATGAAAAcaattcttatttaaaatcGTCGGAAAACTGGGTAGGGTGTCAGCGGTGTGGACGATGGGCCCACACAGCTTGTGCTGGAGTCGACGACGAAGATATGGAGGATGTCttaatatgtattttgtgtGAAGATAAGTAG
- Protein Sequence
- MVRNYKKKTNRGEWSKEAMKKAVEDVLAKKSGFRKAASTYGVPQTTLERYVNKVKQGKEVTFSEPLGPIKKVFSVEEEAEIAGYLKHMEERLFGLTTLDLRRMAYELAVRNNKKHNFNNEKKMAGNAWLRGFLDRQPNLSIRKPEATSAARAMGFNRVAVGKFYQLLGDIYDQHKLTPDKIFNCDETGISVVSKTKSKIIAVKGRKQVGSLSSAERGQTVTVEICFNAAGNYMPPLMIFPRQRMKAELLDHAPPGTTAACNPRGWITTEIFTIWFKQFIQFSGASLDNKVLLLLDGHVSHTQNLEVIDIARQNGVIILCFPPHCTHRLQPADVTFMRPLSTYYDHAATNWLRSHPGRVLTMFQISEIFGQAYLQAATMNTALNGFRKCGIWPFNQDNFTDVDFLPAETTNRPVNEDTPATSDAINLPFSDLSTERHAVIEDSPSTTNGTPAEPAQTNGRNAQLDSNSRPICLQTRSEISLISSQDYCTPTKPATPSSSISPQAQLITPLAVEPETEPEPGPSSLHAAQTRSPVRAVCRDLTSSFSNASPSDIIPIPAVQSYEKRKQYRRGKTAIITSTPYKKEVEERKRPAKLVVDNTTTTKTKKAKGKGKGKGNKGVTGKESQEDTICLYCNDENNSYLKSSENWVGCQRCGRWAHTACAGVDDEDMEDVLICILCEDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01534723;
- 90% Identity
- iTF_00924553;
- 80% Identity
- -