Lnic001346.1
Basic Information
- Insect
- Luperina nickerlii
- Gene Symbol
- -
- Assembly
- GCA_963855955.1
- Location
- OY979662.1:21755573-21757354[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.4e-11 1.8e-08 35.2 0.0 3 38 10 46 8 52 0.85
Sequence Information
- Coding Sequence
- atgcCGAAACGAAAACTATGGGATGCTGGAGCGATGACAAAAGCTGTTGAAGCCGTACGAGCAAATGAAATGGGTTATAAAAAGGCAGCAAAATTATTCGATGTTCCAAGAGCTACTTTGAAAGATTACGTCAAAAATTCTGAAAGATCTGTAGAAACTTTGGTGTCTGGAAAAATGGGAAGAAAACCAGTTCTGCCGATAGAATTGGAAGATGAGCTGGTAAAGTATTGCTTGCAAATGGAGAAGAATTATTATGGTGTCACTGCTTCTGATTTAAAACGAATGGCATTTCAATTGGCGATCAGAAACAATATTCCTCATCCCTTTTCACTGACCAAGAAGAAAGCGGGCAAGAAATGGATGAAGTTGTTTATGGCTCGTCACCCTGAACTATCATTTCGTCAACCGGAGTCATTATCACGAGCTCGTGTTCAAGGTTTTACAGCAGAAAATATTAAGACTTTCTTTAACTTATTAAAACCAGAGATGCAAAAGATTAACTTCAACCCTAACAAAGTTTTTAATGTTGATGAAACAGGGATTAGCACTGTTCAACATAAAGTCAGAAAAATCCTAACAGTGAAAGGCAAAAAAGGAGTTCACAAATTGTCATCTGCTGAAAGAGGTGCATTAGTAACTGTTGTTACTTGTATGTCGGCTACTGGACAATTTATTCCTCCATTGATGGTGTTCCCAAGGAAAAATATGAAAGCTGAACTACTAGATGGAGCTCCTCCTGGAACCATTGCTGGATGCCACCCATCTGGTTGGATCCAGCCTGAACTGTTTACTAAATGGCTGAGACATTTCGTGTCTATCGTAAAACCATCAAAAGAAGATCCCATTCTACTGGTGTTAGATGGGCATTACAGCCATACAAGGAATTTGGATGTAATAGACTTCGCACGTGACAATGGAGTATCAATAATCTGCCTTCCTCCGCATTCTACTGATCATATGCAACCATTAGATGTCTCATTTATGTTTCCTTTGAAGACATACTATGCCCAAGAAATAGAAAATTGGTTGAATAATCACCCAGGGCGAGTTGTTACTCACTACCAAGTTGGAGAAATATTTGGAAAAGCTTATTCAAAAGCTTGTAAAATTGATACAGCAATGAACGGATTTCGAAAAACGGGAATATTTCCACTTAACGAAAACATTTTTGACGAATCACCACATGCTCCTTCTTCGACCGATGCAAACAACACAGCACCGTTGTCAAATGCTGACTCGTCATCTTCACATTCCATAATGGTTAGACCAACAACTCCATTGTCACAACCGTGTATAACTCCTTCATCTCCATTTATAGTTCCATCAGATGTGCATCCTGTTCCGGTAATTGAACCACCTTTAACCTCAACAAGACGAGGGAAAGCGATGGTAGTCACGGCCTCTCCACATAAACATGAAATAATGGAAGCAAAAAAGAAGCAGACAGAGAAGAATGAAAGAGTAGCAGGAAGAAAAAatgaaaacgtaaaaaaaacaacgaaaaaaccAGCtggaagcaataaaaataaaaccaaaaagcgACGAAAAGCACAGACTTCTGACGAAGAATcatctgatgatgatgacccaGTTTTGGTGTCCACTGACGAAGAAGATAGCGAGGATGATGACGCTGAATGCCCAGTTTGTCATAATACCTATTCTCAAGACAAAAAGGGAGAAAAATGGATAAGATGCATTCAATGTTTCCAATGGATGCACGAAgattgcgttgaaaatccaggaCCAAAATTTGTCTGCActatttgtatggagaattag
- Protein Sequence
- MPKRKLWDAGAMTKAVEAVRANEMGYKKAAKLFDVPRATLKDYVKNSERSVETLVSGKMGRKPVLPIELEDELVKYCLQMEKNYYGVTASDLKRMAFQLAIRNNIPHPFSLTKKKAGKKWMKLFMARHPELSFRQPESLSRARVQGFTAENIKTFFNLLKPEMQKINFNPNKVFNVDETGISTVQHKVRKILTVKGKKGVHKLSSAERGALVTVVTCMSATGQFIPPLMVFPRKNMKAELLDGAPPGTIAGCHPSGWIQPELFTKWLRHFVSIVKPSKEDPILLVLDGHYSHTRNLDVIDFARDNGVSIICLPPHSTDHMQPLDVSFMFPLKTYYAQEIENWLNNHPGRVVTHYQVGEIFGKAYSKACKIDTAMNGFRKTGIFPLNENIFDESPHAPSSTDANNTAPLSNADSSSSHSIMVRPTTPLSQPCITPSSPFIVPSDVHPVPVIEPPLTSTRRGKAMVVTASPHKHEIMEAKKKQTEKNERVAGRKNENVKKTTKKPAGSNKNKTKKRRKAQTSDEESSDDDDPVLVSTDEEDSEDDDAECPVCHNTYSQDKKGEKWIRCIQCFQWMHEDCVENPGPKFVCTICMEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01564523;
- 90% Identity
- iTF_00924540;
- 80% Identity
- iTF_00924543;