Lnic008494.1
Basic Information
- Insect
- Luperina nickerlii
- Gene Symbol
- -
- Assembly
- GCA_963855955.1
- Location
- OY979667.1:11404186-11405016[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-11 5.9e-09 36.7 0.0 3 38 10 46 8 53 0.85
Sequence Information
- Coding Sequence
- atgcCGAAACGAAAACTATGGGATGCTGGAGCGATGACAAAAGCTGTTGAAGCCGTACGAGCAAATGAAATGGGTTATAAAAAGGCAGCAAAATTATTCGATGTTCCAAGAGCTACTTTGAAAGATTACGTCAAAAATTCTGAAAGATCTGTAGAAACTTTGGTGTCTGGAAAAATGGGAAGAAAACCAGTTCTGCCGATAGAATTGGAAGATGAGCTGGTAAAGTATTGCTTGCAAATGGAGAAGAATTATTATGGTGTCACTGCTTCTGATTTAAAACGAATGGCATTTCAATTGGCGATCAGAAACAATATTCCACATCCCTTTTCACTGACCAAGAAGAAAGCGGGCAAGAAATGGATGAAGTTGTTTATGGCTCGTCACCCTGAACTATCATTTCGTCAACCGGAGTCATTATCACGAGCTCGTGTTCAAGGTTTTACagcagaaaatattaaaactttcTTTAACTTATTAAAACCAGAGATGCAAAAGATTAACTTCAACCCTAACAAAGTTTTTAATGTTGACGAAACAGGGATTAGCACTGTTCAACATAAAGTCAGAAAAATCCTAACAGTGAAAGGCAAAAAAGGAGTTCACAAATTGTCATCTGCTGAAAGAGGTGCATTAGTAACTGTTGTTACTTGTATGTCGGCTACTGGACAATTTATTCCTCCATTGATGGTGTTCCCAAGGAAAAATATGAAAGCTGAACTACTAGATGGAGCTCCTCCAGGAACTATTGCTGGATGCCACCCATCTGGTTGGATCCAGCCTGAACTGTTTACTAAATGGCTGAGACATTTCGTGTCTATCGTAAAACCATAA
- Protein Sequence
- MPKRKLWDAGAMTKAVEAVRANEMGYKKAAKLFDVPRATLKDYVKNSERSVETLVSGKMGRKPVLPIELEDELVKYCLQMEKNYYGVTASDLKRMAFQLAIRNNIPHPFSLTKKKAGKKWMKLFMARHPELSFRQPESLSRARVQGFTAENIKTFFNLLKPEMQKINFNPNKVFNVDETGISTVQHKVRKILTVKGKKGVHKLSSAERGALVTVVTCMSATGQFIPPLMVFPRKNMKAELLDGAPPGTIAGCHPSGWIQPELFTKWLRHFVSIVKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00704895; iTF_01341140; iTF_01341092; iTF_00237397; iTF_00281179;
- 90% Identity
- iTF_00237397;
- 80% Identity
- -