Lnic019083.1
Basic Information
- Insect
- Luperina nickerlii
- Gene Symbol
- -
- Assembly
- GCA_963855955.1
- Location
- OY979674.1:18411549-18413385[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-10 1.1e-07 32.7 0.1 1 40 3 42 3 47 0.93 2 2 2.5e-12 1e-09 39.1 0.1 1 40 65 104 65 108 0.95
Sequence Information
- Coding Sequence
- ATGTGGACAGAAGAAGACTTACGGGCAGCTATGGAAGCTGTTACAAGCGGACATATGATACGGACACATGCAGAAAAACGATATGGAATTCCAAAACGAACTCTCTACCGTCATTTGAAATCAGGAAGCTTAGTGAAAAGACTGGGACGTACTATTGAATTCGGTTCAAACCATACAAAACGTGCCATGTGGACCGAAGAAGACTTACGGGCAGCTATGGAAGCTGTTACAAGCGGACGTATGACACGGAGAGATGCAGGAAAACGATATGGAATTCCAAGACGAACTCTCTACAGCCATTTGAAAACAGGAAGCTTAGTAAAAAAACTGGGACGAAACTCAATGTTCGGCGAGGTACACGAAAAAGAACTCGTGAAAAGATTACTAAATCTTTCAAACTATGGGGTGTCTCTGACCTCGAAAATAATTCGCAAAGAAGCCTTTGATTTTTGtctagaaaataatattgaacatGTTTTTAATGTCACTACGGGCCTTGCAGGCACCGATTGGTATAATGGGTTTTTGTACCGACACCCTGAGATGATTGCATTGGTACAACAATTGTAA
- Protein Sequence
- MWTEEDLRAAMEAVTSGHMIRTHAEKRYGIPKRTLYRHLKSGSLVKRLGRTIEFGSNHTKRAMWTEEDLRAAMEAVTSGRMTRRDAGKRYGIPRRTLYSHLKTGSLVKKLGRNSMFGEVHEKELVKRLLNLSNYGVSLTSKIIRKEAFDFCLENNIEHVFNVTTGLAGTDWYNGFLYRHPEMIALVQQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00758057;
- 90% Identity
- iTF_00758057;
- 80% Identity
- -