Gfla011627.1
Basic Information
- Insect
- Gortyna flavago
- Gene Symbol
- -
- Assembly
- GCA_963669345.1
- Location
- OY770135.1:4062455-4065342[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.9e-12 5.2e-09 36.4 0.1 1 41 3 43 3 47 0.93 2 2 1.2e-10 6.4e-08 33.0 0.1 1 40 70 109 70 113 0.95
Sequence Information
- Coding Sequence
- ATGTGGACAGAAGAAGACTTACGGGCAGCTATGGAAGCTGTTACAAGCGGACGTATGACACGGAGAGATGCAGAAAAACGATATGGAGTTCCAAAACGAACTCTCTACCGTCATTTGAAAACAGGAAGCTTAGTGAAAAGACTGGGACGAAAGTCAATGTTCGGTTCTATTGAATTTGGTTCAAACCATGCAAAACGTGCGATGTGGACAGAAGAAGACTTACGGGCAGCTATGGAAGCTGTTACAAGCAGACGTATGACACGAAGAGATGCGGGAAAACGATATGGAATTCCAAGACGAACTCTCTACAGTCATTTGAAAACAGGAAGCTTAGTGAAAAAACTGGGACGAAACTCAATGTTCGGCGAGGTACATGAAAAAGAACTCGTGAAAAGATTACTAAATCTTTCAAATTATGGGGTGTCTCTGACCTCGAAAATAATTCGCAAAGAAGCCTTTGACTTTTGTCTAGAGAATAATATTGAACATGTTTTTAATGTCACTACGGGCCTTGCAGGCACCGATTGGTATAATGGGTTTTTGTACCGACACCCTGAGATGATTGCAATGgTACTATTGAATATGGTTCAAGCCATGCAAAACGTGCGATGTGGACAGAAGAAGACTTACGGGCAGCTATGGAAGCTGTTACAAGCGGACATATGA
- Protein Sequence
- MWTEEDLRAAMEAVTSGRMTRRDAEKRYGVPKRTLYRHLKTGSLVKRLGRKSMFGSIEFGSNHAKRAMWTEEDLRAAMEAVTSRRMTRRDAGKRYGIPRRTLYSHLKTGSLVKKLGRNSMFGEVHEKELVKRLLNLSNYGVSLTSKIIRKEAFDFCLENNIEHVFNVTTGLAGTDWYNGFLYRHPEMIAMVLLNMVQAMQNVRCGQKKTYGQLWKLLQADI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00924516;
- 90% Identity
- iTF_00924516;
- 80% Identity
- -