Lfer028123.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453268.1:2491884-2497522[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0051 33 5.5 0.1 16 44 157 185 149 192 0.84 2 5 0.72 4.7e+03 -1.4 0.1 26 44 195 213 186 218 0.79 3 5 0.0026 17 6.5 0.1 22 44 219 241 211 249 0.84 4 5 0.00013 0.87 10.6 0.2 21 43 246 268 235 273 0.82 5 5 3.4e-05 0.22 12.5 0.2 20 43 273 296 269 301 0.88
Sequence Information
- Coding Sequence
- ATGGCTGCGATAATGAGATGGCATAGGCTGGAGCAGTCTAGTGAAGACATAAAGGCGTCAGAGGACATTTCAGACACACAACAGGGTATTGTTCCTCATCCTGCCAGAATAACAGATGTTTTCATAAAATTGGAGCCAGAAGACAACTCCTTGGTTACATGTAATATTGGGGACGTATACGATGTGACAATCAAGAAAGAGTTTCACACTGTAGAACTGCACATTGAACCCACGGTGCTCCAGCAACCTGCCCTGCCTGGCCCTAGTTTGTGCACAACGCGGGTGGACACGGTTGGCTGTGCACCAGTGAAGCAGGAGTTAGAGTCAGATTCGGACATGGACGATGGAAAGACGTCTGGACTATCTGGCGATAGTCCCTCGAACTGCGAATATTCGAGCGCTATGAGAAAGTCTTCTAATAGAGTATACGCTGACACATCTACGAATTTTGGCTCCTTAAAGCCATGTGAATCTATGTATACAAGCGAGAAACCTTTTCATTGTGATGAATGTAGtggtatattaaaatatcgtGCTGAGTTAAACAGACATAAACGCGAACGCACCGGTAGGGAACTATTCACTTGTGATGTCTGTGATGTTACGTTCTTATATAATAGTGAATTGATTAGACATATGTGTAAACATACTGGCGAGAAGTCATTTCATTGTAAAATATGTTATGCAAAGTTTCCTCAACTAGGTGGTCTGAAGAagcacacacgcacacacaccggTCATAGACCATTTAGTTGTGAAACATGTGATGCGAGATTTAGATGctctagtaatttaaaaagaCACAAGCGCAAAcataccggtgagaaaccatttagttgtgaaatatgtgatgcaaaattcaAATGCCCTAGTAATTTAAGAAGACATGAACGAGTACACACCGATGAGAAACTAATCAGATCGGATGCTGTGGCGAATACGTAA
- Protein Sequence
- MAAIMRWHRLEQSSEDIKASEDISDTQQGIVPHPARITDVFIKLEPEDNSLVTCNIGDVYDVTIKKEFHTVELHIEPTVLQQPALPGPSLCTTRVDTVGCAPVKQELESDSDMDDGKTSGLSGDSPSNCEYSSAMRKSSNRVYADTSTNFGSLKPCESMYTSEKPFHCDECSGILKYRAELNRHKRERTGRELFTCDVCDVTFLYNSELIRHMCKHTGEKSFHCKICYAKFPQLGGLKKHTRTHTGHRPFSCETCDARFRCSSNLKRHKRKHTGEKPFSCEICDAKFKCPSNLRRHERVHTDEKLIRSDAVANT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00924136;
- 90% Identity
- iTF_00924136;
- 80% Identity
- iTF_00924136;