Basic Information

Insect: Luffia ferchaultella
Gene Symbol: -
Assembly: GCA_949709985.1
Location: OX453268.1:3537459-3548278[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.032 2.1e+02 3.0 0.0 26 51 148 173 138 175 0.84

2 7 4.7e-05 0.3 12.0 0.0 23 44 173 194 167 199 0.88

3 7 0.00029 1.9 9.5 0.0 21 46 199 224 194 229 0.91

4 7 0.45 2.9e+03 -0.7 0.1 26 44 232 250 225 254 0.75

5 7 0.0028 18 6.4 0.0 21 46 255 280 244 282 0.87

6 7 0.00041 2.6 9.0 0.0 21 43 283 305 281 310 0.90

7 7 0.053 3.4e+02 2.3 0.1 17 46 307 340 305 346 0.69

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.032	2.1e+02	3.0	0.0	26	51	148	173	138	175	0.84
2	7	4.7e-05	0.3	12.0	0.0	23	44	173	194	167	199	0.88
3	7	0.00029	1.9	9.5	0.0	21	46	199	224	194	229	0.91
4	7	0.45	2.9e+03	-0.7	0.1	26	44	232	250	225	254	0.75
5	7	0.0028	18	6.4	0.0	21	46	255	280	244	282	0.87
6	7	0.00041	2.6	9.0	0.0	21	43	283	305	281	310	0.90
7	7	0.053	3.4e+02	2.3	0.1	17	46	307	340	305	346	0.69

Sequence Information

Coding Sequence: ATGAACGATGAATGCACCAATGTGTACACAGCTGCAGAACACCTGAACAGAAACACCCTCTCGTCTTCAGTTTACATCGACCAGCAAGTGGTTCTCATCAAAGCAGAACCGAAGGAGGAGTACCGAGAATCTGATCACATAAACACGATGATACCTAGCCCTTTTATTCCTGGTTGTGTGGATAAGAAGATCAAGGTAGAATTTGACATTTCTGACAATGATAACTCACGTTGCACACAAATAGAACTGGAGTTGGAACCGCAGCCTACAGTCCTGCAGTGCACTTACTCACCTCCTCGTAGTCAGAATACACCAGAGGTGGACACTGCTTATTGGGAGCCAATGAAAAAGGAAGCTGAGCAAAATGAAGATGTGAAGCATACTCCTGTGCTATTCAGTGACAATGTTACATCTAGTTTGACTACTGTAAAGGATGGTCATATTTGTAGACTCTGTGATGCAAAATTCGCTACTTCTGGTACTTTAAATCGACACCTAAGCACACACAGCGGCGTGAAACCGTATAGTTGTGATATATGTTATTCGAAATTCAAAACTTCTGGTAATTTAATTAGACATAAACGTatacacaccggtgagaaaccatataATTGCGAAATATGTGACGCTAAATTCACTCAAGTGGGCAATTTGAAAATTCACATGCAAATACATACTGGTGAAAGATTATATAGTTGTCACACGTGCGATGTTAAATTTGCTAGATATGGAAATCTGAAAAGACACATGTTGTCCCACAGCGGCGAGAAACCGTTTACTTGTGATACGTGTGATGAAAAATTCACTAGATCGGAACTTTTGAAAAGACACGTACTTTTGCACACCGGTGAGAGACCGTTCGGTTGTgaaatatgtgatgcaaaattcaGGACCTCTTATAATTTAAACGTACACAAATCTAAacacaccggtgagaaaccGTACGCTTGTGATACTTGTGACACCAAATTTGTTACAGTTGACCGTCTAAACAGACATCAACGCCAGCACGTAGGTGTAAAACGACACGTGTGCGATGTTTGTAATTTGAAATTCATGACCCCTTTAGAGTTACAAACACATAAACTTATACATAATGAGAACATTCCTTTCGCCGTCGAGACGATGgttccctggtccaaggatgccaaattaacTGTCAAGGATTTGTTTATCGCGCTGCGCTTATTGACAGGTGATCCTTTGGGCAAGGATGACTGGATGATGATTTGA
Protein Sequence: MNDECTNVYTAAEHLNRNTLSSSVYIDQQVVLIKAEPKEEYRESDHINTMIPSPFIPGCVDKKIKVEFDISDNDNSRCTQIELELEPQPTVLQCTYSPPRSQNTPEVDTAYWEPMKKEAEQNEDVKHTPVLFSDNVTSSLTTVKDGHICRLCDAKFATSGTLNRHLSTHSGVKPYSCDICYSKFKTSGNLIRHKRIHTGEKPYNCEICDAKFTQVGNLKIHMQIHTGERLYSCHTCDVKFARYGNLKRHMLSHSGEKPFTCDTCDEKFTRSELLKRHVLLHTGERPFGCEICDAKFRTSYNLNVHKSKHTGEKPYACDTCDTKFVTVDRLNRHQRQHVGVKRHVCDVCNLKFMTPLELQTHKLIHNENIPFAVETMVPWSKDAKLTVKDLFIALRLLTGDPLGKDDWMMI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00923931;
90% Identity: iTF_00923931;
80% Identity: iTF_00923931;