Lfer028180.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453268.1:3199968-3208973[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0019 12 6.9 0.1 21 46 271 296 267 302 0.84 2 11 0.077 5e+02 1.7 0.1 21 43 299 321 293 326 0.84 3 11 0.00014 0.88 10.6 0.1 21 50 327 356 322 359 0.85 4 11 0.071 4.6e+02 1.9 0.1 21 43 355 377 349 382 0.86 5 11 0.00086 5.6 8.0 0.0 21 47 383 409 377 414 0.85 6 11 0.041 2.6e+02 2.6 0.2 21 43 411 433 406 437 0.82 7 11 0.026 1.7e+02 3.3 0.0 21 44 439 462 433 470 0.79 8 11 0.026 1.7e+02 3.3 0.0 21 46 467 491 461 495 0.85 9 11 0.003 20 6.2 0.0 21 44 495 518 490 526 0.85 10 11 0.013 84 4.2 0.0 22 52 524 554 520 555 0.91 11 11 0.011 74 4.4 0.0 22 48 552 578 545 580 0.87
Sequence Information
- Coding Sequence
- ATGCGAATCAAAGCAGAGCTTGGTCTTGAGGCTGCCGGTGCTGCAGTACAACAGGAATCGGAAATTGCTTCAGTGGTGCAGCAGCATCTTATCCTACCAATGGGCACGCACTTTACAGAGgtgGACAGATTAGATGAACGGGGAGATCGAGTATCTGTCAATAGAACATTGAATACGGCGACAAACGCTGAGCAACCCTTAGATGTCGTTAAGACAGTGAAGGACGAGCCCAAGTGGGACGACGATAACGCGACTCCATTCTGGGAAGTGCCCGTTCAATACGATGCGTCCGACACCGCACGGGAGCGTATGGAGCGCCCGCTGCCCAGTATCATCGGCGACCTAGTGGCTTCGGAACATAAAGCAGTAGCTTTGTTGAAATCATACTGTGAAAAGTGTTGGATGAAATTTACTGATTCGAATGGCATAACGGACCACATCTGTAACGACATTGAAAAGAAACTCGGTGCAgAAGTTGATGGTGTGCACAGGAAGCAGATTAAAGTAGAGGTCGATTATGAAGAACCTCAAATCAAACAAGAACGGAACTTAGCAACCGATCACCAGCGACTTCTTTCTCCCGGCGCGAGTTTACACACGACAGAGATAAGTATCGTGTATGAACCACCTTCGAAAAAGAAGTACCGGTTGCGACGAGGAAGCAACGGACAGGCTCCGGTTACATCAGAAGATACTGAAACGTTCACCTCCACGACTTTGGAGAACGGAAAGAAACAGTTTTGTTGCAAAACGTGCGATATAAAGTTCAGACACCGTTCCAAAATATTAGAACACGTACTCACCCATTCGGATGAAAAACCGTATATCTGCGAAATCTGTAATGCGGCGTTTCGGACGAACAATTATCTAAAAACGCATAGACGCGtgcacactggtgagaaaccgttTAAGTGTACCGAATGTAGCGCGGCTTTTAGGGGATCGAGCGCCCTAATCGTCCACAAACGTAttcacactggcgagaaaccgtaTACGTGTGAAGTATGTAGTGCGAAATTCCGAAACTCGAACCATTTAAGTTTACATAGACGGttgcacactggcgagaaaccctTTAAGTGTAACGAGTGCGACGCCAGTTTTAGAGTATCTAACGCTTTGAATGTACACAAACGCGTTCACACCGGTGAGAAACCTTACGGTTGTGAAGTGTGCAACGCGAAATTCACTACTTCTCACAATCTAACAAAACACAAACGCATTCATACAGGCGAGAAACCGTATAGTTGTGAAATATGTAATGCGAGATTCACGACCTCTGGTTACCTGCATGTACACAGACGCATACACACAGGCGAGAAACCGTACGCGTGTGACATATGTGACGCAAAATTCACAACCTCCGGCTATTTAAACGTACATAAACGAATACACACCGGTGAAAAACCTTTCACGTGCTACACATGCGATGCAGAATTCACATCTTCGGGCCAACTGAAAGCTCATAAATTGAAACACACCGGTGAAAGGCCTTTCGCGTGTGACATATGTGACGCGAAATTTGCATTCTCCAGCAGTTTAAGTCGACATAAACTGGTTCACACCGGTGATAAACCGCACACGTGTGACACTTGCGATGCGAAATTCACCAACTCGAGTTATTTGAACGCACATAAGAGCGTTCATTCCGGCGCGAAACCGTTCAATTGTGAAATATGTGATGCAAGATTCAAAACGGCTGGCAATATGAGTAAACACAAACGCGTACATCACGGTGGCTCGCTGGACCATAGTTTTATAGATGACATGCAGAGTAGTATATtcggaaaattttaa
- Protein Sequence
- MRIKAELGLEAAGAAVQQESEIASVVQQHLILPMGTHFTEVDRLDERGDRVSVNRTLNTATNAEQPLDVVKTVKDEPKWDDDNATPFWEVPVQYDASDTARERMERPLPSIIGDLVASEHKAVALLKSYCEKCWMKFTDSNGITDHICNDIEKKLGAEVDGVHRKQIKVEVDYEEPQIKQERNLATDHQRLLSPGASLHTTEISIVYEPPSKKKYRLRRGSNGQAPVTSEDTETFTSTTLENGKKQFCCKTCDIKFRHRSKILEHVLTHSDEKPYICEICNAAFRTNNYLKTHRRVHTGEKPFKCTECSAAFRGSSALIVHKRIHTGEKPYTCEVCSAKFRNSNHLSLHRRLHTGEKPFKCNECDASFRVSNALNVHKRVHTGEKPYGCEVCNAKFTTSHNLTKHKRIHTGEKPYSCEICNARFTTSGYLHVHRRIHTGEKPYACDICDAKFTTSGYLNVHKRIHTGEKPFTCYTCDAEFTSSGQLKAHKLKHTGERPFACDICDAKFAFSSSLSRHKLVHTGDKPHTCDTCDAKFTNSSYLNAHKSVHSGAKPFNCEICDARFKTAGNMSKHKRVHHGGSLDHSFIDDMQSSIFGKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00923906;
- 90% Identity
- iTF_00923906;
- 80% Identity
- iTF_00923906;