Lfer028124.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- -
- Assembly
- GCA_949709985.1
- Location
- OX453268.1:2510498-2517361[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.16 1e+03 0.8 0.1 22 43 203 224 191 229 0.84 2 12 0.0012 7.9 7.5 0.0 22 44 231 253 225 257 0.89 3 12 0.012 80 4.3 0.2 21 43 258 280 254 285 0.87 4 12 0.00084 5.4 8.0 0.0 20 44 285 309 280 314 0.87 5 12 0.00049 3.1 8.8 0.0 21 51 314 344 310 346 0.87 6 12 0.21 1.4e+03 0.3 0.0 21 43 342 364 340 369 0.82 7 12 0.00071 4.6 8.3 0.0 21 43 370 392 353 397 0.90 8 12 0.0025 16 6.5 0.0 21 44 398 421 393 428 0.87 9 12 0.017 1.1e+02 3.9 0.0 20 46 425 451 422 454 0.89 10 12 0.00068 4.4 8.3 0.0 21 43 454 476 450 481 0.90 11 12 3e-05 0.19 12.7 0.1 21 43 482 504 478 509 0.91 12 12 7.7e-05 0.5 11.4 0.0 21 44 510 533 505 538 0.90
Sequence Information
- Coding Sequence
- ATGGAAACTGGAAATGAACATAGTTTGCACAAAGGCCAGATTCGAGACGAAGTTTCCATCATACGAGAATACCGGCTGGATGGACAAAAAAACCGGGAGAACATAAGTACAGACATGCAACAGGATGCCCTTCCTCAGTCTAGTGGAATAACAGACATCATTATAAAATTGGAACCAGAAGACAACTTCTCGGATACATGTAATATTGGAGACGTATATAATGTCCAAATCAAGACAGAGCCTCACAGTGAAGAGGTGTACTTTAAACCTGCAGTAGTCCAGCAACATGTTTTACCCGGGCCAAGTTTGTGCACAATAGAGGTTGGCGCTGTTGATTGTTCAAGAGTGAAGCAGGAGTCAGAGTTGGATCTGAACGCCAAAAAGATGACCAGGCCGCATGGCGATAGTTCCTCGAGCAAGCACGAATATTCGAGCGCTAAAAGCGAGCCTGCTAATAGATTAGACACTGAAAAAGTAACTAATTCTGGTCATTCAAAGACTGGTAAATTTATGCGTACTGGTGGATCGGTTTTAAGATGTGATGATTGCAGTTCAACGTTCAAATATCGTGCTGAATTAAATAGACATAAACGTTTACATACTGGTGAGAAACTGCACAGTTGTGAAGTTTGTAATGCTAAGTTTATATTGTATAGTGAATTACGTAGACATACTTATAAACATACAGGTGacaaaccatttacttgtgaaaTATGTGATGGAAAATTTACTCAGTCGGCGGCTTTGAAGGAGCACATTCGCACGCATACAGGTGAGAGACCATACAGTTGTGAAATATGTGATGCCAAATTCAAATGCACTAGCAATTTGACAGTACATAAGCGCAAgcatactggtgagaaaccatttagttgCGAAATGTGTGATGCTAAATTTGCTGAATCGAGGCATTTAAAAAGCCACATACTCCAACACACAGGGGAAAAGCCGTTTAGTTGTGAAATATGTGATGCAACCTTTAATCGATCTGTACATTTAAAGACTCATATGCGCATACATACCGGTGAAAAGCCTTTTAGTTGTAAAATGTGTGATGCCAAATTTACGCAATGGGGAGGTTTGCATGAGCATGAACGTGTACACactggtgaaaaaccatttaGTTGTGAATTTTGTGATGCAAAATTCAGTTGTTCTAGTAATTTGAAGAGACATAAGCGCAaacatactggcgagaaaccattccATTGCAAAGTGTGTAATGCAGCTTTTTCTGAAACCAGATATTTAAAAAGCCACATACTCCAACACAaaggcgaaaaaccatttatttgtaaagtgTGTGATGCAAATTTTTATAGAGTTGAAAACATGAAGGCGCACAtgcgcatacacaccggtgagaGGCCATTTACTTGTAAAATGTGTGACGCTACATTTACTATGTCGCGAGGTTTACAAGAGCACGaacgcatacatactggtgagaaaccatttagttgTGAACTGTGTGGTACAAAATTTAGAAGTTCTAGGAATTTGACAAGACATAAGCGCCAACATATCGGTGAGACGCCATTCCATTGCGAAATATGTGATGCTAAATTTGGTGAATCCAGACAATTAAAAAGGCATATTGTCCAACACACCAGTGAAAACCATTTAGTTGTAGATACAGTATGTAACACAACCGTTAGTTGA
- Protein Sequence
- METGNEHSLHKGQIRDEVSIIREYRLDGQKNRENISTDMQQDALPQSSGITDIIIKLEPEDNFSDTCNIGDVYNVQIKTEPHSEEVYFKPAVVQQHVLPGPSLCTIEVGAVDCSRVKQESELDLNAKKMTRPHGDSSSSKHEYSSAKSEPANRLDTEKVTNSGHSKTGKFMRTGGSVLRCDDCSSTFKYRAELNRHKRLHTGEKLHSCEVCNAKFILYSELRRHTYKHTGDKPFTCEICDGKFTQSAALKEHIRTHTGERPYSCEICDAKFKCTSNLTVHKRKHTGEKPFSCEMCDAKFAESRHLKSHILQHTGEKPFSCEICDATFNRSVHLKTHMRIHTGEKPFSCKMCDAKFTQWGGLHEHERVHTGEKPFSCEFCDAKFSCSSNLKRHKRKHTGEKPFHCKVCNAAFSETRYLKSHILQHKGEKPFICKVCDANFYRVENMKAHMRIHTGERPFTCKMCDATFTMSRGLQEHERIHTGEKPFSCELCGTKFRSSRNLTRHKRQHIGETPFHCEICDAKFGESRQLKRHIVQHTSENHLVVDTVCNTTVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00923908;
- 90% Identity
- iTF_00923908;
- 80% Identity
- iTF_00923908;