Lfer029367.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- egg
- Assembly
- GCA_949709985.1
- Location
- OX453270.1:4438821-4499425[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.4 1.2e+04 -3.2 0.3 16 33 758 772 757 773 0.76 2 3 2.1e-11 1.7e-07 31.5 0.0 5 68 1191 1247 1187 1255 0.81 3 3 0.96 7.8e+03 -2.6 0.0 9 26 1508 1525 1506 1528 0.84
Sequence Information
- Coding Sequence
- ATGGAGGCCGTGGAGGCGGACGTTGTCCGCTATACTGGCGAACTAAACTGTGATACTGCTATAGATAAAGAACTCATTACATCAGATGAACAACCAAAAGCTGATTCAAATATCAAGAGTGGTATTTCAGTTGCATCATCAAAATTGATACAGGACACAGAGGACACAGGAATTCAGCCATCATCTTCAATAGGAACAGAAGTTGAAGCAAATACACCTACTCAAATGGATCCAGATGCTTCTGATGAAATTCCTGAAGTTGATGATAGTTTGGGTCTTTTGGCTGAATCATCAAAAATGGTTGAAGAAGAAGACGATCAAGATGACGATgaggatgatgacgatgatgatgaacagGATGTAGaAGGAAACCAGTTAAACATAGAATACTCTGAAGATTCGAGTGCTCACCAATCAGAAGACAACAAGGAGTGTGATATGCAAATGTCACCAGATGCGACGAATCCCGAGAATGCTCTGGACGGTTTTAATGATGCCGCAGAGACGACAGATGATGATACAGGAACAGCGACAATGAAAATAGACGACGTCTCATCTTTGAAAATAGAGGACGAGTCATTGTCAGAAATAGAGGAAATGCCGACACTGAGATTAGAGGACGAGTCATTGTCAGAAACAGAGGAAATGCCGACATTGAAATTAGAGGACGAGTCATTGTTAGAAATAGAGGAAATGCCGACATTGAAAATAGAGGAAATCTCATCATTGAATATCTCAGAACATGATATACAATTATCTACCGAAGAAGTTCTGAAGGATAAAAACAAAGTAGAAGAAGAAGTAAACAGTGCGCTAGCAGGTCcagaaactattaaaaaaaccccTGAATCAGAACATGATGTTCTGTCTGAACCTGAAGCCATGGAAACTGATGATGTATCACTACCAGAAACAAATGATGCAGTCAACATTAAAGATAGTACTAAAACTCCAGAAGAAACTGAAAAAGTGGAAAATGAGTCATCTCAGAATATAGAAAATATACGAGAAACTTCACCCGAAAACACATCCCCAACGTTGGATGTACAGCCACCAAGtaagaaaatgaaattagaaATTGTGAAACCGAGTAATGTACTGAATATCGTCGATTTAGAGGAGAGCTCTTCCGAAGACGATATTCAAGAAGTCAAAAAGAAATCAACAGAAAATAAAGAATCCGTAGAAGACATATCGTCTGACACAGACAAAGAAACGCCGACTACTGGAGAAGCCAAAAAAACAAGCGTAAACCTGCCCAAAGACATAGACGTTATGAGCACGAGTACCGGGGACACATCGGAAATCGTCGCTAAAGCCGATGAgaccataataaataatatacctacgcCGGCTCCGCCGAAAATGGCAAGAATAAACACGAGTGAGGTGTCAATAAAGACCGCAAGTTCCACCCCAGAACCGACCTTGGTGATACCTGAAACAAAGGCCCAAGAATCGACAACAGACGAAAATTCATCACCAACCAAAGAGAAGAGACCATTCCAAAGTCCGAAATTCTCTCTTGAAGTATTCAATCTGGattctgatgatgaagatacTCTCAAGCGTGCTGCAGaCACAATACCACTGGCGCCGAAGAAACTGAGCGCGGTGGAACTACAAAAGGCCCGAGACACGAACCGTTGTATAAATTACCTTTGCACGAGCATCGGAAAATCGGACGTACAATATCAGCCGGCGCCGGGTTTCGTGTGGAGTTACTTCGAATTGAAAAGGACTAAGCGCGTGGAACTCGTCTGCCAAACGTGTTTTGACCAAGTCGCCAGAAGGATGCAGGGTATGATAAATGGAGTCAAAGATATGTCTCCACTCATGCAGTTGGACGTGGAGAAGCAGTGTCTGGAGTTGGTGGAGATTTCTGATTCTGATAGTGACAGTGATTTAGATGAGTCAATGGCGAAAGAGGAAGACATTATAGGAGCTAAATGTGCAACgttcTTAGAAGACAATCTGGCTAACATAATAAACGATGTTTGGAGTGCATATAAGTTGGACGAAAGAATAAAATCGGCAAAATCTGAATTAGATGAAGAGTTGCTCAAAATGGAGAAAGAGCACGCTGAGATCGACGCCCTACTGAATAATTGTCAGGCGTCCACAGACAATGTCAGGAACGAATTGTATGCTACTTTCGCCGATAAAATTCAAGAAATGGAGCCAGTGGAATTCGTGGACATGCCGCCTTCGCAGATGTTTCTCACAAGTGTAACTTCAGACCTCTCATCAGGTGCCTCCGATAAAGAGaaTCGTAGATCGATGCGCCAACGCAAATCTGTTTATCAATCGGAAGTCGTCACGAACGCGAATAAAAATGTGGCCATCCCATTGGGATACCTTGACACTATgaaatccAATGCTATAGGCCAAGATAACGATTCGTCTCTAAACAAACAGGACATTGATGAcAACGCGGACATAGCGGTGGTGAAGTTATCAGCGGAGGTCGCCCCGGCGGGACTTCCCCCGCCCGGCGTTGTAGATCGGCCAGCGTTGCAAGTGGGCGACGCGATTTACGTCCTGCGACACACTTTCGGCACTTGGGTGCGAGCGAAAGTCATCGAAGTCGTTGCCACTAATAATCCGAGCTTCGGAGATTTCTCTTTATACAAAGTCCGTCTCGACTATGTGAAAAAAGGTGATAACCAAAAGGTTGAAAAAAGCGCAGGTGTAAAGCAAGTCAACGGCAGATACGTGGCATATTCTGAGCCGGCACCTGTGAGATTAAGTATAGgcACTCGCGTGATCGCTCTATTCAAGGACACAATAAACACGATGAAACGCGACAGCTTCTACTCTGGCATAGTCGCTGAAATACCTACGCCGGTAAATAACTTCAGGTACTTGGTATTCTTCGACGACGGATACGCCCAATACGTCCATCACGAGAACGCGCGTGTCGTTTGCGAGAGCTCGCCAAGAGTATGGGAAGATGTACATCCGGACTCGCGCGAGTTCGTCCGCAAATACCTACTCGCATACCCCGAAAGGCCTATGGTGCGTTTACACGCCGGGCAGAGCTTGAAGACCGAATGGAATGGAAAGTGGTGGATATCCAAAGTGTTATCGGTGGACGCGTCGCTTGCTCAAGTCTACTTCGAGTCGGACAATCGTACCGAGTGGATATACAGAGGTTCAACTCGTCTGGCGCCACTGTTTCTGGAACTGCAAGCGGCCGAAAGGAGATCTCAGAACCAACGTCCTAGAACTTTTCTCAGATCGAACAAGACGCAAGCACATACGCAAAACATGCCTTACGTCGAATACTTAAGATCAGATGAACAAGACAACAAGGCAACCACTGACGTTCAGCATGAAGACCTCAAACGTCAACGGGCAGTCGCTAAGAAGTCGACAATGTCCTCCCATCTACCGCAGACGCACCAACCTGCACCGGCGCCGGTCCAAGTGCCCCTGGACAATGTTATAAGTAGAGTTgttTACTACACACCCAAAGCGGCGGTGAAACCACTCAAAATGACACCTCACACTTGTACTCCGAGATGCAAACGCACCGACGTCTTGCCTCTGAAGGAGCTTAGGACTTACAACCCTCTAGCGAGACCCCTTTTGAGCGGATGGGAGAgGCAAGTACTCCGCTTCAAAGGGCGTAAAGTAGTGATGTACAGGGCGCCCTGCGGTCGGCGCTTGCGCAATATATCGGAGCTGCATCGCTATTTAAGGATCATACATTCTGACATGAGCGTCGATCTTTTCGACTACGGACCCGCCACGCATTGCCTCGCCGAATTCGTGCTCAACAGATGCAACGTGAGCAAAAAGGACCTATCTCACGGAAAAGAGAGTGTACCAGTGCCGTGCGTGAACTACTATGACAGTTCGCTCCCTGAGTTTTGCTCGTACAGTACGGAGAGAACCCCGACTGCTGGGGTACCGCTCAACACGGATCCAGAATTTTTGTGCGGATGTGACTGCATCGATGATTGTCAGGACAAATCGAAATGCGCGTGTTGGAAAATGACACTAGAGGGCGCCAAAACGATAGGGATGGAGGGAGACGAAGTGGGATACATATACAAGAGATTGCTTCAACCTTTGACTTCTGGGATATACGAGTGTAACGTGAGATGTAAATGCAGAGATACCTGTTTGAATCGAGTAGCACAACATCCTTTGCAACTGAAGTTACAGgtattcaAAACTTTGAATCGCGGTTGGGGCATAAGAGCACTAAATGATGTGCCAAGAGGTGCCTTCCTGTGCATATATGCGGGAAATCTGCTCACAGACGCAACCGCTAATCTGGACGGTGTCAACGAAGGGGACGAATATTTGGCCGAATTGGATTACATCGAAGTGGTCGAGAAACTAAAAGAGGGCTACGAATCGGACGTGGCTGAAAGAGAAAGAAAGAGAAATAAAAAGAAGGGCGCGGATGGCGAAAGTTCAGGATCCGATGACGAGGAAGGTAACACATCGTCAGAAGACGAGCAAAAAAAGGGCAGCGAGGATGTGGACTTCAGGCCAGGCTTCGACGTAGGACCTCTGGCTTACGAGTTCAAAAAACATCTGCGCAAACGCAACAAGAACAAAGACGGCTCCGACGACAAAGAAGATGAGAACGGAGATGATAGAGAAAAGCAGAAGGAAAATGCAGAAGACGACTGCATCACTATAAGCGATGATGAAGAAGTGAGAGAGCCGTCCCGTTTCACGGCACAAGCCGGACTAGACGACGAAGACTTGGTGTCGAAGCACCGATCGGTCCGTTCATACTTCGGCAGAGACGAAGCCTGCTACATCATGGACGCTAAAGTGCAGGGCAACATTGGCCGTTACCTGAATCACTCGTGCTCACCGAACGTATTCGTCCAGAACGTTTTCGTGGACACGCACGATCCTCGCTTCCCCTGGGTGGCATTTTTCGCTGCGTCTCATATAAGAGCCGGGACCGAGTTGACTTGGAACTACAACTACGATATAGGTTCCGTTCCCGACAAGGTTATGTACTGCAAATGTGGAGCCCCCAACTGCAGGGGAAGGTTGCTTTAA
- Protein Sequence
- MEAVEADVVRYTGELNCDTAIDKELITSDEQPKADSNIKSGISVASSKLIQDTEDTGIQPSSSIGTEVEANTPTQMDPDASDEIPEVDDSLGLLAESSKMVEEEDDQDDDEDDDDDDEQDVEGNQLNIEYSEDSSAHQSEDNKECDMQMSPDATNPENALDGFNDAAETTDDDTGTATMKIDDVSSLKIEDESLSEIEEMPTLRLEDESLSETEEMPTLKLEDESLLEIEEMPTLKIEEISSLNISEHDIQLSTEEVLKDKNKVEEEVNSALAGPETIKKTPESEHDVLSEPEAMETDDVSLPETNDAVNIKDSTKTPEETEKVENESSQNIENIRETSPENTSPTLDVQPPSKKMKLEIVKPSNVLNIVDLEESSSEDDIQEVKKKSTENKESVEDISSDTDKETPTTGEAKKTSVNLPKDIDVMSTSTGDTSEIVAKADETIINNIPTPAPPKMARINTSEVSIKTASSTPEPTLVIPETKAQESTTDENSSPTKEKRPFQSPKFSLEVFNLDSDDEDTLKRAADTIPLAPKKLSAVELQKARDTNRCINYLCTSIGKSDVQYQPAPGFVWSYFELKRTKRVELVCQTCFDQVARRMQGMINGVKDMSPLMQLDVEKQCLELVEISDSDSDSDLDESMAKEEDIIGAKCATFLEDNLANIINDVWSAYKLDERIKSAKSELDEELLKMEKEHAEIDALLNNCQASTDNVRNELYATFADKIQEMEPVEFVDMPPSQMFLTSVTSDLSSGASDKENRRSMRQRKSVYQSEVVTNANKNVAIPLGYLDTMKSNAIGQDNDSSLNKQDIDDNADIAVVKLSAEVAPAGLPPPGVVDRPALQVGDAIYVLRHTFGTWVRAKVIEVVATNNPSFGDFSLYKVRLDYVKKGDNQKVEKSAGVKQVNGRYVAYSEPAPVRLSIGTRVIALFKDTINTMKRDSFYSGIVAEIPTPVNNFRYLVFFDDGYAQYVHHENARVVCESSPRVWEDVHPDSREFVRKYLLAYPERPMVRLHAGQSLKTEWNGKWWISKVLSVDASLAQVYFESDNRTEWIYRGSTRLAPLFLELQAAERRSQNQRPRTFLRSNKTQAHTQNMPYVEYLRSDEQDNKATTDVQHEDLKRQRAVAKKSTMSSHLPQTHQPAPAPVQVPLDNVISRVVYYTPKAAVKPLKMTPHTCTPRCKRTDVLPLKELRTYNPLARPLLSGWERQVLRFKGRKVVMYRAPCGRRLRNISELHRYLRIIHSDMSVDLFDYGPATHCLAEFVLNRCNVSKKDLSHGKESVPVPCVNYYDSSLPEFCSYSTERTPTAGVPLNTDPEFLCGCDCIDDCQDKSKCACWKMTLEGAKTIGMEGDEVGYIYKRLLQPLTSGIYECNVRCKCRDTCLNRVAQHPLQLKLQVFKTLNRGWGIRALNDVPRGAFLCIYAGNLLTDATANLDGVNEGDEYLAELDYIEVVEKLKEGYESDVAERERKRNKKKGADGESSGSDDEEGNTSSEDEQKKGSEDVDFRPGFDVGPLAYEFKKHLRKRNKNKDGSDDKEDENGDDREKQKENAEDDCITISDDEEVREPSRFTAQAGLDDEDLVSKHRSVRSYFGRDEACYIMDAKVQGNIGRYLNHSCSPNVFVQNVFVDTHDPRFPWVAFFAASHIRAGTELTWNYNYDIGSVPDKVMYCKCGAPNCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -