Lfer005486.1
Basic Information
- Insect
- Luffia ferchaultella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949709985.1
- Location
- OX453244.1:2484846-2507331[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.4e-75 1.7e-70 238.5 21.2 1 296 112 398 112 402 0.86 2 2 1 3.2e+04 -6.2 14.0 5 164 402 458 396 473 0.49
Sequence Information
- Coding Sequence
- ATGGGTACAGACACAAAGTCGGTGACTCCGGAGAGCAGCGACACAGACGAAGGCGAAGCATTTACCGATGGAGATTTTGGGGATTCGGATGAGGACCAGAAGGTGGAGACGACGGCGGATGTCAAAACGTCACAAGTTCACGAGACTGTCAATTTTAACGTCAAGAATGGCTTGGAAACTAATGGACACAGTAACGGATTTTCAATACAAAGCAACGGCCACGAAAAGAATCCCGATGAGCCTGTCGTTTTTCCTACGACTGATGTCAGAAGGGACTCGCATGTGGAATCGAATCCCAGTATTTTGGGAATTCTTGGAAATCAACATTCCCAAGCCGAACAGCGATTAGCGGCGCGACGAGCTGCGCGAGCTGAAGCGCGGGAAATCCGAATGCGGGAATTGGAACGCCAACAGCGAGAACACGAAGACCATGCTGACAAAGCCTATGATATGTATTCAGAGACCGTGGGTCGACGCAGCGGGCGGTTGGCCGCGCTCAGTCCTGGCGCGCTGCACTCCCCGCGCCGCAGCTCCGAAGATTCCGTCGATGAAAGTTTCTCCATCAAGGATCTTAGACACGAGTTGAAAGAAGTCGAAGAGAAATTTAGAAAGGCGATGATATTGAACGCGCAGCTGGATAACGACAAGGCAGCGCTAGGTTACCAGCTGGAACTGCTCAAAGATCGTCTGGAAGAGCTGCATGAAGCACACGCGCAGTTACAGcGCGAACACAAAGAAAAATGCTCGGCGCACGAGCGGTTACGCCGGGAACATGCTGCTTTAGAACGTGAAGTAGCTGCAGCTAGAGACGCCGTAAGAGCTCGCGACACGGCAGCCGAAGCAGCTGGTTACGCTTTCGTTGAAGCTGGTGTCGACCCCGCTGCGGGTGATGCCGATGTTACGCCGGGCGAAGCTTGCGGTTCGGTTCCACCGCTGGCTCTAGTATCGCGCGAGTCGGAGCGTCTACTTAACGAAGCCGGGGAAGGCACGCTCGATGTACGGTTGCAGAATATTCTAAATCAGAAACTGGGATTGGAATCGGAAGTACGTAAATTGAAGCTTCAGCTGAACGACGAGCGCGCCGCAAGGCACAACGGCGTCGCACACCCCGACGACGACGAATACGAGAGTGAGCttGAAACGCTTCGTAAATGCGTAGCAGAAGCAAAAGCGAGGGCGGCGAGGGCGGAGGCCGAGGCAGCGCTACAGGGTGCTGCGGTCGCCCGACTAGAGGCACAAGTGTCCAGGCTGAGAGCACGCCAGGACCACCAAGATGAACATGAAGAGCAACTAAAACAAGAACGAAGGAGGCTCCAACGGGAGGCTCGTGAAGCCCTAAATCGGGTCGAAGAGTTGGAGACGGAGAACAGTCATCTAACAAAACGACTAGACAAACTCAAGAATGCAAAATCTGCACTACTCAAGGAGCTGTGA
- Protein Sequence
- MGTDTKSVTPESSDTDEGEAFTDGDFGDSDEDQKVETTADVKTSQVHETVNFNVKNGLETNGHSNGFSIQSNGHEKNPDEPVVFPTTDVRRDSHVESNPSILGILGNQHSQAEQRLAARRAARAEAREIRMRELERQQREHEDHADKAYDMYSETVGRRSGRLAALSPGALHSPRRSSEDSVDESFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRLEELHEAHAQLQREHKEKCSAHERLRREHAALEREVAAARDAVRARDTAAEAAGYAFVEAGVDPAAGDADVTPGEACGSVPPLALVSRESERLLNEAGEGTLDVRLQNILNQKLGLESEVRKLKLQLNDERAARHNGVAHPDDDEYESELETLRKCVAEAKARAARAEAEAALQGAAVARLEAQVSRLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -