Lchi011064.1
Basic Information
- Insect
- Luehdorfia chinensis
- Gene Symbol
- -
- Assembly
- GCA_029286615.1
- Location
- JAGSMQ010000095.1:1109532-1111910[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 9.9e-07 9.9e-05 23.2 1.3 1 23 9 32 9 32 0.95 2 20 0.00037 0.037 15.1 0.4 2 23 38 60 37 60 0.95 3 20 3.6e-05 0.0036 18.3 0.3 2 23 69 91 69 91 0.96 4 20 5.2e-06 0.00052 21.0 2.2 2 23 100 122 99 122 0.95 5 20 0.28 28 6.1 1.4 2 12 128 138 128 140 0.86 6 20 6.7e-07 6.7e-05 23.8 0.9 2 23 158 180 157 180 0.96 7 20 9e-08 9e-06 26.5 1.5 1 23 186 209 186 209 0.98 8 20 0.38 38 5.7 0.7 1 23 217 240 217 240 0.89 9 20 9.9e-05 0.0099 16.9 0.8 1 23 262 285 262 285 0.97 10 20 0.0024 0.24 12.6 0.2 1 23 315 338 315 338 0.97 11 20 0.35 35 5.8 0.5 2 21 346 365 345 366 0.91 12 20 0.015 1.5 10.1 2.2 2 23 375 397 375 397 0.95 13 20 0.009 0.9 10.8 5.5 1 23 422 445 422 445 0.96 14 20 1.3e-05 0.0013 19.7 1.2 2 23 452 474 451 474 0.96 15 20 2.6e-05 0.0026 18.7 2.2 2 23 481 503 480 503 0.94 16 20 0.0096 0.96 10.7 1.5 1 23 509 532 509 532 0.97 17 20 0.16 16 6.9 7.1 2 23 540 562 540 562 0.95 18 20 0.00067 0.068 14.3 0.3 1 23 569 592 569 592 0.97 19 20 0.018 1.8 9.9 1.3 1 22 599 620 599 622 0.89 20 20 0.0016 0.16 13.1 2.4 2 23 636 658 636 658 0.96
Sequence Information
- Coding Sequence
- ATGTCAAACAATAAAGTTACGAACTACGTGTGCGACTACTGTAGTCGCCCATTCACAAGAAAATATAACTTGCAGACTCATATTGAGAACTACCACATGAACTCCTCGTGCTACTGCGAAATATGCGATCAGAGATTCGGCACACCGGCCGGACTAAAATTGCATCTATCAAGAGGCCACAACAGATACGGCCAGGCTTTGCCCGAGTGCGATCTATGCGGTCGAATATTCACAAGGAAACAGAACATAATATCACATATGACGACAGTACATCTGCAAGGCGAACCCCCAGATATCAGATGCCGCTTATGCGACAAAAACTTCAAAACTGAAAGGAATCTTAAGAGGCATATGAATCAATTGCATAATCCAAATGTAAATTCTTGCGATGATTGTCATAAATCTTTTAAGGGTAAAAATCCTGCAGTCTATATTCAATGTACCCACAACAGCATCGAAAACGGAACGATCAAATGCAATCTTTGCGACAAAGTTTACACCAACAATCGCAATTTGAAAAGGCATATAGAAATGTATCACGGTGAAAGAGGTGAGTTCAGATGCGACGTTTGTCCCAAAGTATATACATCCAATCAAAGCTTGAGGAGACACATGAGGACCAGACACAATCCCGAATGTAGGGCACAGTTTATATGtcaattttgttacaaaactaTAATTGGGAAAGATAATTTAGACAATCACGTCACATTCTACCACAGTCAAGAACTTTGTAGCTCAAATGACAGCGATGCTTTTGATTTTACATCCAAATCGAGGGAATTTGTTTGCAACCATTGTAATAAGATCTTTAATGCGGAGCCTCTCCTGCGACGCCATGTTAAAATGGAACATTCTTTCGAAGACTTctataattattgcaaaaaGTCGCtactaaatttaatgaaaagaaGTGACATAGAAACGCGTAAGAACGAATTTTATATTTGCGAATTTTGCAGAAATCCCTTCGGCAGCGTTTATGAATTAAAAGATCATATGAGAATTAATCATGATAAAGAGTACTGTCTGTCGACCTGCAATGTTTGCTTTTACAAATTCTATAGCAGGGAAACCGTGTTGGAGCACAAGAAAATCTGTCTTCCACCACCAGACGTAAATTCTTGCAGCCATTGCGACAAACTCTTCACTGATATCTCCAGTCTAGAATTTCACACAAGAATTTTTCATCCCCAATCTCAAGTCGCCGACTCGTTAATATCCTCCAGTAACTTCGACGAGACCTCAATGGACCATAGTTCCTATAAATGTGCCCATTGTGACCGTATGTATTACAGTGACAGATCGTTAAAACACCATGTTAAACTAAAACATACGACGGATGAGGCTATGGAATGTAAATTTTGCGGCAAAGTTTGCAGCAACAAATATTACCTGGCGTCACACATTAAGATTGTCCACAACGACGACTCTTGGTCTAAATGCGATTACTGTGATAAACAGTTCAAATCCAAGAGGAATATCAGACGCCACATCGAATATACACATTTAGGGATGCAGAGGTACAAGTGCATCGAATGCGAGACGTTGTTCAAAGAGAAGAGAAGCCTAAGAAAACACGTCAGAGTCAAACACCCCAATTCGACATCATTCCCCCAATGCCATATTTGTCACAAGCGCTTCGAATCGGCAAAATCTTGCAAGATACATCTTAAATTACTCCATTCGTTCAATATGAATACCCACCCTTGTGATCTTTGCTCCGTATCGTTCAGTTCGATCGAGGCTCTGAATATACATCTGCAGACGAAACATTTAGCCGAGGACGAAATCTATAAATGTGAGGAGTGTAATCTAGTTTTCAACGGACACGAGAAATTCGAACAGCACAACGAACTGTCACATGTGAATTTAGTTCAGAACTTGAAGCATAAAGCTTTACCGCGTTGTGTAATCTGCATAAAAGATTTTAGCACTCGGAAGACGTTGAAGCGTCACATAAAGAAGTTTCACCAGGAGTTCAATCCTGACGAATTGATCAGTTTCGGATGGCGGGTGCGGTTGACTAATGTGGACTGTGAAGACTGCATTAGGAGTTTCAACGACGAATTCAACTTCAACGTATATCAAGAGTTGAAACACTTGAGAGAATCTATCATATTCAAATGTCAAACATGTTTCTCCTCGTACGACGCATTTGAGTACTCCATTTTAAGGTATAAACTCGGCAAGATGGAGTCGCGTAATAGTAAAATGATATTGAGTGAGCTGTGCACTGCTGAGATTAGCGACGGCGAAGCGACTCACGTCGGGCACGGCACTTCGGCGATTATGGAACCGGAGAGCACGACTAATGACATAAAAATAGAATCCGATTATGATATGTGTGAAGTTAAGACTGAACCCAAGTCGCCGTAA
- Protein Sequence
- MSNNKVTNYVCDYCSRPFTRKYNLQTHIENYHMNSSCYCEICDQRFGTPAGLKLHLSRGHNRYGQALPECDLCGRIFTRKQNIISHMTTVHLQGEPPDIRCRLCDKNFKTERNLKRHMNQLHNPNVNSCDDCHKSFKGKNPAVYIQCTHNSIENGTIKCNLCDKVYTNNRNLKRHIEMYHGERGEFRCDVCPKVYTSNQSLRRHMRTRHNPECRAQFICQFCYKTIIGKDNLDNHVTFYHSQELCSSNDSDAFDFTSKSREFVCNHCNKIFNAEPLLRRHVKMEHSFEDFYNYCKKSLLNLMKRSDIETRKNEFYICEFCRNPFGSVYELKDHMRINHDKEYCLSTCNVCFYKFYSRETVLEHKKICLPPPDVNSCSHCDKLFTDISSLEFHTRIFHPQSQVADSLISSSNFDETSMDHSSYKCAHCDRMYYSDRSLKHHVKLKHTTDEAMECKFCGKVCSNKYYLASHIKIVHNDDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRVKHPNSTSFPQCHICHKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFSSIEALNIHLQTKHLAEDEIYKCEECNLVFNGHEKFEQHNELSHVNLVQNLKHKALPRCVICIKDFSTRKTLKRHIKKFHQEFNPDELISFGWRVRLTNVDCEDCIRSFNDEFNFNVYQELKHLRESIIFKCQTCFSSYDAFEYSILRYKLGKMESRNSKMILSELCTAEISDGEATHVGHGTSAIMEPESTTNDIKIESDYDMCEVKTEPKSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00923020;
- 90% Identity
- iTF_00923020;
- 80% Identity
- iTF_00923020;