Lchi011064.1
Basic Information
- Insect
- Luehdorfia chinensis
- Gene Symbol
- -
- Assembly
- GCA_029286615.1
- Location
- JAGSMQ010000095.1:1109532-1111910[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0061 22 5.8 0.8 15 43 7 32 2 38 0.73 2 19 1.5 5.3e+03 -1.8 1.1 18 43 38 60 33 61 0.64 3 19 0.00017 0.62 10.8 0.1 18 43 69 91 65 92 0.95 4 19 4.2e-05 0.15 12.7 1.0 17 44 99 123 97 123 0.93 5 19 0.47 1.7e+03 -0.2 0.6 16 29 126 139 124 151 0.80 6 19 3.9e-05 0.14 12.9 3.6 12 43 152 180 147 181 0.86 7 19 8e-05 0.29 11.9 0.5 17 44 186 210 182 210 0.89 8 19 0.078 2.8e+02 2.3 0.2 16 38 216 235 211 241 0.73 9 19 0.00016 0.59 10.9 0.4 9 43 255 285 253 286 0.74 10 19 0.043 1.5e+02 3.1 0.1 11 43 309 338 301 339 0.83 11 19 0.41 1.5e+03 -0.0 0.0 16 27 373 384 369 398 0.79 12 19 0.0015 5.5 7.8 3.1 7 43 412 445 410 446 0.91 13 19 0.052 1.9e+02 2.9 7.7 4 29 438 463 435 475 0.76 14 19 0.00034 1.2 9.8 2.3 6 43 469 503 466 504 0.83 15 19 0.24 8.7e+02 0.7 1.0 17 44 509 533 505 533 0.84 16 19 8 2.9e+04 -5.6 9.2 16 29 538 551 531 593 0.74 17 19 2 7.3e+03 -2.3 0.1 16 30 598 617 594 632 0.65 18 19 0.0014 5.1 7.9 2.2 18 44 636 659 620 659 0.85 19 19 3.2 1.2e+04 -2.9 0.0 21 33 744 762 735 765 0.77
Sequence Information
- Coding Sequence
- ATGTCAAACAATAAAGTTACGAACTACGTGTGCGACTACTGTAGTCGCCCATTCACAAGAAAATATAACTTGCAGACTCATATTGAGAACTACCACATGAACTCCTCGTGCTACTGCGAAATATGCGATCAGAGATTCGGCACACCGGCCGGACTAAAATTGCATCTATCAAGAGGCCACAACAGATACGGCCAGGCTTTGCCCGAGTGCGATCTATGCGGTCGAATATTCACAAGGAAACAGAACATAATATCACATATGACGACAGTACATCTGCAAGGCGAACCCCCAGATATCAGATGCCGCTTATGCGACAAAAACTTCAAAACTGAAAGGAATCTTAAGAGGCATATGAATCAATTGCATAATCCAAATGTAAATTCTTGCGATGATTGTCATAAATCTTTTAAGGGTAAAAATCCTGCAGTCTATATTCAATGTACCCACAACAGCATCGAAAACGGAACGATCAAATGCAATCTTTGCGACAAAGTTTACACCAACAATCGCAATTTGAAAAGGCATATAGAAATGTATCACGGTGAAAGAGGTGAGTTCAGATGCGACGTTTGTCCCAAAGTATATACATCCAATCAAAGCTTGAGGAGACACATGAGGACCAGACACAATCCCGAATGTAGGGCACAGTTTATATGtcaattttgttacaaaactaTAATTGGGAAAGATAATTTAGACAATCACGTCACATTCTACCACAGTCAAGAACTTTGTAGCTCAAATGACAGCGATGCTTTTGATTTTACATCCAAATCGAGGGAATTTGTTTGCAACCATTGTAATAAGATCTTTAATGCGGAGCCTCTCCTGCGACGCCATGTTAAAATGGAACATTCTTTCGAAGACTTctataattattgcaaaaaGTCGCtactaaatttaatgaaaagaaGTGACATAGAAACGCGTAAGAACGAATTTTATATTTGCGAATTTTGCAGAAATCCCTTCGGCAGCGTTTATGAATTAAAAGATCATATGAGAATTAATCATGATAAAGAGTACTGTCTGTCGACCTGCAATGTTTGCTTTTACAAATTCTATAGCAGGGAAACCGTGTTGGAGCACAAGAAAATCTGTCTTCCACCACCAGACGTAAATTCTTGCAGCCATTGCGACAAACTCTTCACTGATATCTCCAGTCTAGAATTTCACACAAGAATTTTTCATCCCCAATCTCAAGTCGCCGACTCGTTAATATCCTCCAGTAACTTCGACGAGACCTCAATGGACCATAGTTCCTATAAATGTGCCCATTGTGACCGTATGTATTACAGTGACAGATCGTTAAAACACCATGTTAAACTAAAACATACGACGGATGAGGCTATGGAATGTAAATTTTGCGGCAAAGTTTGCAGCAACAAATATTACCTGGCGTCACACATTAAGATTGTCCACAACGACGACTCTTGGTCTAAATGCGATTACTGTGATAAACAGTTCAAATCCAAGAGGAATATCAGACGCCACATCGAATATACACATTTAGGGATGCAGAGGTACAAGTGCATCGAATGCGAGACGTTGTTCAAAGAGAAGAGAAGCCTAAGAAAACACGTCAGAGTCAAACACCCCAATTCGACATCATTCCCCCAATGCCATATTTGTCACAAGCGCTTCGAATCGGCAAAATCTTGCAAGATACATCTTAAATTACTCCATTCGTTCAATATGAATACCCACCCTTGTGATCTTTGCTCCGTATCGTTCAGTTCGATCGAGGCTCTGAATATACATCTGCAGACGAAACATTTAGCCGAGGACGAAATCTATAAATGTGAGGAGTGTAATCTAGTTTTCAACGGACACGAGAAATTCGAACAGCACAACGAACTGTCACATGTGAATTTAGTTCAGAACTTGAAGCATAAAGCTTTACCGCGTTGTGTAATCTGCATAAAAGATTTTAGCACTCGGAAGACGTTGAAGCGTCACATAAAGAAGTTTCACCAGGAGTTCAATCCTGACGAATTGATCAGTTTCGGATGGCGGGTGCGGTTGACTAATGTGGACTGTGAAGACTGCATTAGGAGTTTCAACGACGAATTCAACTTCAACGTATATCAAGAGTTGAAACACTTGAGAGAATCTATCATATTCAAATGTCAAACATGTTTCTCCTCGTACGACGCATTTGAGTACTCCATTTTAAGGTATAAACTCGGCAAGATGGAGTCGCGTAATAGTAAAATGATATTGAGTGAGCTGTGCACTGCTGAGATTAGCGACGGCGAAGCGACTCACGTCGGGCACGGCACTTCGGCGATTATGGAACCGGAGAGCACGACTAATGACATAAAAATAGAATCCGATTATGATATGTGTGAAGTTAAGACTGAACCCAAGTCGCCGTAA
- Protein Sequence
- MSNNKVTNYVCDYCSRPFTRKYNLQTHIENYHMNSSCYCEICDQRFGTPAGLKLHLSRGHNRYGQALPECDLCGRIFTRKQNIISHMTTVHLQGEPPDIRCRLCDKNFKTERNLKRHMNQLHNPNVNSCDDCHKSFKGKNPAVYIQCTHNSIENGTIKCNLCDKVYTNNRNLKRHIEMYHGERGEFRCDVCPKVYTSNQSLRRHMRTRHNPECRAQFICQFCYKTIIGKDNLDNHVTFYHSQELCSSNDSDAFDFTSKSREFVCNHCNKIFNAEPLLRRHVKMEHSFEDFYNYCKKSLLNLMKRSDIETRKNEFYICEFCRNPFGSVYELKDHMRINHDKEYCLSTCNVCFYKFYSRETVLEHKKICLPPPDVNSCSHCDKLFTDISSLEFHTRIFHPQSQVADSLISSSNFDETSMDHSSYKCAHCDRMYYSDRSLKHHVKLKHTTDEAMECKFCGKVCSNKYYLASHIKIVHNDDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRVKHPNSTSFPQCHICHKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFSSIEALNIHLQTKHLAEDEIYKCEECNLVFNGHEKFEQHNELSHVNLVQNLKHKALPRCVICIKDFSTRKTLKRHIKKFHQEFNPDELISFGWRVRLTNVDCEDCIRSFNDEFNFNVYQELKHLRESIIFKCQTCFSSYDAFEYSILRYKLGKMESRNSKMILSELCTAEISDGEATHVGHGTSAIMEPESTTNDIKIESDYDMCEVKTEPKSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00923025;
- 90% Identity
- iTF_00923025;
- 80% Identity
- iTF_00923025;