Lchi013024.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Luehdorfia chinensis
Gene Symbol
-
Assembly
GCA_029286615.1
Location
JAGSMQ010000123.1:341177-357844[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 8.9e-05 0.0089 17.1 0.1 3 23 132 152 131 152 0.97
2 19 8.1e-07 8.1e-05 23.5 1.2 1 23 158 180 158 180 0.99
3 19 5e-06 0.0005 21.0 2.7 1 23 186 208 186 208 0.99
4 19 3.3e-06 0.00033 21.6 2.6 1 23 223 245 223 245 0.98
5 19 0.00014 0.014 16.4 0.6 1 23 260 282 260 282 0.98
6 19 3.9e-05 0.0039 18.2 2.6 1 23 297 319 297 319 0.98
7 19 3.2e-07 3.2e-05 24.8 1.5 1 23 334 356 334 356 0.99
8 19 0.00014 0.014 16.4 2.8 1 23 362 384 362 384 0.98
9 19 1.4e-05 0.0014 19.6 0.3 1 23 417 439 417 439 0.99
10 19 1e-05 0.001 20.1 2.1 1 23 445 467 445 467 0.99
11 19 0.032 3.2 9.0 1.8 1 23 474 496 474 496 0.98
12 19 5.4e-07 5.4e-05 24.1 2.3 1 23 502 524 502 524 0.99
13 19 0.037 3.8 8.8 1.8 1 23 531 553 531 553 0.98
14 19 2.2e-06 0.00022 22.1 1.5 1 23 559 581 559 581 0.99
15 19 0.00042 0.042 15.0 0.7 1 23 588 610 588 610 0.99
16 19 2.4e-06 0.00024 22.0 1.9 1 23 616 638 616 638 0.98
17 19 0.0018 0.18 13.0 0.3 1 20 644 663 644 666 0.93
18 19 3.3e-05 0.0033 18.4 1.3 2 23 673 694 672 694 0.96
19 19 3.2e-06 0.00032 21.6 1.4 1 23 700 723 700 723 0.97

Sequence Information

Coding Sequence
ATGTTTGAACAGCAAATCAAAGCTGAACCTATgagCTTCTACACTTCCCATTCACACGTGCACTCGGGGCCCCCTACAATAGTCCGATCCGACTCAAACCATGCCGTGTTAAGTATGAACCAACATCATCACCAAGAAGACTCAAAAGATAGCCTCATAATACAACAACAAGTACAACATCAACAGGAGCTGCTGGAACAGCACCAACAACAACAGGAATTACAAGCACAAGATGATGAGttaagttTCAAAGGGATGGATGATGAAGGAGTTGAAATGGACATGGATGGTCGGCAATGTTCTCAGGGAATGGGAGTGGACATGGGTTCCGTTCAAACTAAGATGGAGGTGTCAAATGGGGGACAAGTAGTGCCAAGATCAAAACCACAAGCCTGTAAGgTCTGTGGGAAAGTTTTATCATCAGCATCTTCATATTACGTCCACATGAAGTTACACTCCGGAAATAAGCCTTTCCAATGTACGGTTTGCGACGCGGCTTTTTGTCGGAAGCCGTACCTGGAGGTACACATGCGAACGCACACTGGCGAGAGACCGTTCCAATGCGACCTATGCCTAAAGCGATTCACACAGAAGTCCAGTCTCAATACGCACAAACGCGTCCATACCGATGAGCACATGCGCGCGTTGATGGTGAAGGAGCGGCCCTACAAGTGCGAACTCTGTCAGATGCGCTTCACGCAGAGTTCCAGTCTCAACCGGCACAAGAAAATACACACGGAGGAACACAAACGCGCGCTGCTGGCTAAGGAACGTCCCTACCAGTGCGGCGTCTGCTTTGTGCGATTCACCCAGAAATCGAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGCGCGGCCGTACCAGTGCCACATCTGTTTTATCCGCTTCACTCAGAAGTCCAGCCTGGGCCGACACGGAAAGATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAGTGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAGCGTATACACACCGGCGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGCTTTTGGGGGATTGGCAGCGGGCGGGCGGTTGCGTCGGCGACGTGCGTTACTCGCTTTTGTGTGTGCCCCGGGCGCAGTGCAAGGGCGACCTTACACGTGCGGGCTTTGCCCGGCGGCCTTCGCACGCCGCCCCCACCTGGACACTCACATGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCCTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGCCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAACGGACGCACTCAGTGCAGGGCCGGCCGTTCCAGTGCCTGCAGTGTCCGGCCGCCTTCACCTGCAAGCAGTACCTCGAGATTCACAACCGGACGCACACCGGCGAGCGGCCTTACCAATGCGACGTATGCCTTAAGAGATTCGCTCAAAAATCCACACTCAATATACACAAACGAACGCACACAGtgcaaggGCGGCCGTATCAGTGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAGATACACATGCGCACACACACCGGCGAGCGGCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCTACACTCAACATTCACAAGCGAATTCACACCGGTGAACGTCCATATGCATGTGATATTTGTCAGAAACGGTTTGCTGTGAAAAGTTATGTAACAGCTCATAGGTGGTCGCACGTTGCTGATAAGCCGCTGAACTGCGAGCGGTGCTCGATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACTCCGCCGCGTCCTGCTACGAGTGCAGCGTCTGCGGACGCACCTTTGTGCGCGATAGCTACCTTATACGACACCACAATCGTGTTCATCGAGAGAACCACAGCAACATGTCGGCGAATAGCATTGGCACGATAAATAGCGTCGCCACTAACACCAATAATTCTAACAATAGTAATTTTGACTCGCCGGGCGTTTGTGACTTAAGTTTTGTGCCGATGGTTAATCGCTACATGACATCGCAGGGCACTCAAGTGTCGATGCAAGATACGCAAAGCAAAATGTCCGCCATGTCTCCCCAGTCCATCGCCTCCATTTCATCTCCCCCTCCTCCTCACACGCCGACGCCGCAGCAGATGTCTGGTCAGATGCGTCTGACTGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHSHVHSGPPTIVRSDSNHAVLSMNQHHHQEDSKDSLIIQQQVQHQQELLEQHQQQQELQAQDDELSFKGMDDEGVEMDMDGRQCSQGMGVDMGSVQTKMEVSNGGQVVPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKERPYKCELCQMRFTQSSSLNRHKKIHTEEHKRALLAKERPYQCGVCFVRFTQKSSLGRHGKIHTEEHRRALLEKARPYQCHICFIRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTAFGGLAAGGRLRRRRALLAFVCAPGAVQGRPYTCGLCPAAFARRPHLDTHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSMTFTSKSQFALHIRTHSAASCYECSVCGRTFVRDSYLIRHHNRVHRENHSNMSANSIGTINSVATNTNNSNNSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPTPQQMSGQMRLTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_00035005;
80% Identity
-