Lchi015852.1
Basic Information
- Insect
- Luehdorfia chinensis
- Gene Symbol
- br
- Assembly
- GCA_029286615.1
- Location
- JAGSMQ010000161.1:774714-777101[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-29 2.1e-26 92.9 0.6 1 108 22 125 22 127 0.95
Sequence Information
- Coding Sequence
- atgaataatgcaTCGCAATTCTCTTTACGGTGGAATAACTACGTTTCTCACGTAACGGAAGCATTCAATGAACTTCGATTTTCAAATGACTTAGTTGATGTCACGTTATGTTGTGATGGGGGAAAAATCAAGGCTCACAAAATGTTATTGTCTGCTTGTAGTAGTTACTTTAAGCAAATCTTTAAGGAAAATCCATGCCAGCACCCTGTGGTCATATTCAGAAACTTCAAATTTGAAGATCttaatgcaattattaatttcatgtaCCATGGTGAAGTTAATATATTTCAGGAACAATTGGAATCGTTTCTTTTAACAGCGGAACTTTTAGAGGTAAAGGGCTTGACTGACAATTTAGAAGAAGAAACATCTAAAACCCAAATAAGATTCATTAACAATACCTCATTAGACTTAAGCTCAAAGTCAGGTAGAACAAATGAGGATGTAATAACTATTCCTTCAGATGAACCTATAAATCTTGCTACTATGCAGACTACTAGGGATGAATGCATTCCCGAGGGTAGCTTACAAAAAAATTCACTAGACATCCCTGATACAGAATTACAAGTTGACAATGTAAGAACTGAAGACAGTACAAATTtgagaatgagagctacttcATTACCCAGTGATGAAATGCAAGTTGATACACAATCCACATCAGCTGAAGATTTGTCTGAAAAAAATACTGATTCGGATTTAGCTAAGTTTCGGTGTCAGTTATGTCCTAAGGGATTTAAACATCCAACTTCTTTAACGCTTCATAAAGATTCCCATGCTGGAAAAACGCAATGTCCAGTATGTCATAGATCTTTTTCACGGTCTTATGATATGAGGAGCCATTTACAGAGGATACACCAGGGGAAACAATTGACTATCAAAGAAATTAGATACAAAGGCAATAGTGATACAGTATCTAAGCAATTTACATCATCTAATATATAG
- Protein Sequence
- MNNASQFSLRWNNYVSHVTEAFNELRFSNDLVDVTLCCDGGKIKAHKMLLSACSSYFKQIFKENPCQHPVVIFRNFKFEDLNAIINFMYHGEVNIFQEQLESFLLTAELLEVKGLTDNLEEETSKTQIRFINNTSLDLSSKSGRTNEDVITIPSDEPINLATMQTTRDECIPEGSLQKNSLDIPDTELQVDNVRTEDSTNLRMRATSLPSDEMQVDTQSTSAEDLSEKNTDSDLAKFRCQLCPKGFKHPTSLTLHKDSHAGKTQCPVCHRSFSRSYDMRSHLQRIHQGKQLTIKEIRYKGNSDTVSKQFTSSNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00923243; iTF_01338113; iTF_00856226; iTF_01337835; iTF_00855965; iTF_01149699; iTF_01142483; iTF_01149978; iTF_01142749; iTF_00958340; iTF_00250082; iTF_00249798; iTF_01130120; iTF_01494410; iTF_01176268; iTF_01176557; iTF_01116081; iTF_01494706; iTF_01130422; iTF_01115799; iTF_00958043; iTF_01495868; iTF_01496160; iTF_01144168; iTF_01147472; iTF_01143924; iTF_01147733; iTF_01141272; iTF_01141017; iTF_01154221; iTF_01156754; iTF_01157303; iTF_01154649; iTF_01145358; iTF_01145607; iTF_00204752; iTF_00204452; iTF_01140563; iTF_01140295; iTF_01142038; iTF_01141776; iTF_00195575; iTF_00195267; iTF_00197753; iTF_00197459; iTF_01148186; iTF_01148453; iTF_01148922; iTF_01149201; iTF_01144924; iTF_01144642; iTF_01143487; iTF_01143199;
- 90% Identity
- iTF_00204752;
- 80% Identity
- iTF_00923243;