Basic Information

Insect: Luehdorfia chinensis
Gene Symbol: lrrfip2
Assembly: GCA_029286615.1
Location: JAGSMQ010000800.1:1-10037[-]

Transcription Factor Domain

TF Family: LRRFIP
Domain: LRRFIP domain
PFAM: PF09738
TF Group: Unclassified Structure
Description: LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 1.1e-75 1.6e-71 241.7 20.6 1 264 13 278 13 291 0.89

2 6 0.41 5.9e+03 -3.1 9.4 5 45 314 381 310 421 0.61

3 6 0.051 7.3e+02 -0.1 1.5 33 75 466 506 458 534 0.55

4 6 0.47 6.7e+03 -3.3 4.2 48 82 579 613 554 631 0.61

5 6 2 2.9e+04 -5.6 8.6 21 70 632 682 614 706 0.44

6 6 1 1.5e+04 -4.4 1.8 134 143 760 769 746 785 0.44

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	1.1e-75	1.6e-71	241.7	20.6	1	264	13	278	13	291	0.89
2	6	0.41	5.9e+03	-3.1	9.4	5	45	314	381	310	421	0.61
3	6	0.051	7.3e+02	-0.1	1.5	33	75	466	506	458	534	0.55
4	6	0.47	6.7e+03	-3.3	4.2	48	82	579	613	554	631	0.61
5	6	2	2.9e+04	-5.6	8.6	21	70	632	682	614	706	0.44
6	6	1	1.5e+04	-4.4	1.8	134	143	760	769	746	785	0.44

Sequence Information

Coding Sequence: ATGGTTTATGACCGGAGACTGTCGTTACGAACTCAGGCGGAGCAGCGGCTGGCGGCGCGTCGCGCTGCCCGAGCGGAGGCGCGGGAGATCCGCATGCGCGAGTTGGAGCGCCAGCAGCGCGAGCAGGAGGACCATGCGGACAAGGCTTTCGACATGTACGCAGAGACGGTGGGACGACGAGGGGGTCGGTTAGCAGCACTCAGCCCGTCCATACACTCGCCGCGACGCAGCTCCGAAGACTCCGCCGATGACGTCTTCAGTATCAAAGACCTTAGGCACGAGCTGAAAGAGGTGGAGGAGAAATTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAATGATAAGGCGGCGCTCGGCTACCAGCTGGAACTGCTCAAGGACAGGATAGAGGAGCTGCAAGAGGAACACGCACAACTGCAGCGGGAACACAAAGAGAAGTGCTCGTTACACGAGCGCCTAAAACGGGAGCACGCGTCGCTGGAGCGCGAGGTGACGTCGGCTCGGGACGCGATCCGAGCGCGGGACTCCGCCGCCGCGGCCGCGGGCTTCGCTTTCGTGGAGGCCGCGGCCGCAGCGGAGCCCGAGGACGGCGAGCCGAGCGCTGCGCCGTGCGCGGCGCAGGGCTTCGGCAGCGTGCCGCCGCTCGCGCTCGTCTCGCACCAGTCCGAACAGCTGCTGAACGACGCCGGCGAGGGGACGCTGGACGTGCGGTTGCAGAAGCTGGTGAGCTCGAAGCAGGCGCTGGAGTCGGAGGTTCGCAAGCTGAAGCTGTGCCTCAACGAGGAGCGCGCCGCGCGCCAGAACGGTGTCGCCTCGCACCACGAGCGGGAACATGACAGCGAGCTGGAATCGTTGCGTAAATCAGGGAGCGGGGAGGCCGAAGGGGGCAGGCGCGTCGCGCGCCGAGGCAGGGCGTCGCCGGAAGAGCGGACAGCGATGGCAGCGCAGGGCGCGCGCTGCGCCGAGGCACAGGTGGCCCGTCTGCGCGCGCGACAGGAGCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTACGTACGCGGGGCTGCAGGCGGCCCGGCGCGCCACGAGCACCGGCACGAGCACGAGGAGCAGCGCGAGCAGGAGTGGCGCCGGCTGCAGCGCGAGGTACGTACGCGGGGCTGCAGGCGGCCCGGCGCGCCACGAGCACCGGCACGAGCACGAGGAGCAGCGCGAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTACGTACGCGGCTGCAGGCGGCCCGGCGCGCCACGAGCACCGGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTACGTACGCGGCTGCAGGCGGCCCGGCGCGCCACGAGCACCGGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTACGTACGCGGCTGCAGGCGGCCCGGCGCGCCACGAGCACCGGGACGAGCACGAGGAGCAGCTCAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTACGTACGCGGCTGCAGGCGGCCCGGCGCGCCACGAGCACCGGGACGAGCACGAGGAGCAGCTCAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTACGTACAAGGGGCTGCAGGCGGCCCGGCGCGCCACGAGCACCGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGGCGCTGGCTGCAGCGCGAGGTACGTACAAGGGCTGCAGGCGGCCCGGCGCGCCACGAGCACCGGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTACGTACAAGGGGCTGCAGGCGGCCCGGCGCGCCACGAGCACCGGGACGAGCACGAGGAGCAGCTCGAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTACGTACGCGGCTGCAGGCGGCCCGGCGCGCCACGAGCACCGGGACGAGCACGAGGAGCAGCTCAGCAGGAGCGCGCCTGGCTGCAGCGCGAGGTACGTACGCGGGGCTGCAGGCGGCCCGGCGCGCCACGAGCACCGGCACGAGCACGAGGAGCAGCGCGAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTACGTACGCGGCTGCAGGCGGCCCGGCGCGCCACGAGCACCGGGACGCGCACGAGGAGCAGCTCAGCAGGAGCGGCGCGGCTGCAGCGCGAGGTACGTACGGGCTGCAGGCGGCCCGGCGCGCCACGAGCACCGGGACGAGCACGAGGAGCAGCTCGAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTACGTACGCGGCTGCAGGCGGCGCGCTGCGAGGCACAGGCGGCCCGGCTACGCTCGTTTCGGCTACGCTGGCTACTACTtcaaagtg
Protein Sequence: MVYDRRLSLRTQAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAFDMYAETVGRRGGRLAALSPSIHSPRRSSEDSADDVFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEHAQLQREHKEKCSLHERLKREHASLEREVTSARDAIRARDSAAAAAGFAFVEAAAAAEPEDGEPSAAPCAAQGFGSVPPLALVSHQSEQLLNDAGEGTLDVRLQKLVSSKQALESEVRKLKLCLNEERAARQNGVASHHEREHDSELESLRKSGSGEAEGGRRVARRGRASPEERTAMAAQGARCAEAQVARLRARQEHQDEHEEQLKQERRRLQREVRTRGCRRPGAPRAPARARGAARAGVAPAAARGTYAGLQAARRATSTGTSTRSSASRSGAGCSARYVRGCRRPGAPRAPGRARGAAQAGAAPAAARGTYAAAGGPARHEHRDEHEEQLKQERRRLQREVRTRLQAARRATSTGTSTRSSSAGAAPAAARGTYAAAGGPARHEHRDEHEEQLSRSGAGCSARYVQGAAGGPARHEHRTSTRSSSSRSGAGCSARYVQGLQAARRATSTGTSTRSSSSRSGAGCSARYVQGAAGGPARHEHRDEHEEQLEQERRRLQREVRTRLQAARRATSTGTSTRSSSAGARLAAARGTYAGLQAARRATSTGTSTRSSASRSGAGCSARYVRGCRRPGAPRAPGRARGAAQQERRGCSARYVRAAGGPARHEHRDEHEEQLEQERRRLQREVRTRLQAARCEAQAARLRSFRLRWLLLQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -