Basic Information

Insect: Lucilia sericata
Gene Symbol: Trl
Assembly: GCA_015586225.1
Location: NW:28959-58965[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 9.1e-35 4.4e-31 106.5 2.0 12 54 335 377 326 377 0.94

2 3 1.6 7.8e+03 -3.2 0.1 8 20 392 404 386 412 0.68

3 3 1 4.9e+03 -2.5 0.4 7 28 430 451 427 455 0.76

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	9.1e-35	4.4e-31	106.5	2.0	12	54	335	377	326	377	0.94
2	3	1.6	7.8e+03	-3.2	0.1	8	20	392	404	386	412	0.68
3	3	1	4.9e+03	-2.5	0.4	7	28	430	451	427	455	0.76

Sequence Information

Coding Sequence: ATGATGGCCTTGCCCATGAATTCTTTATATTCCCTTACCTGGGGTGACTATGGCACCTCATTGGTATCGGCCATACAATTGCTGCGTTGTCATGGCGATCTAGTGGATTGTACTTTGGCAGCCGGTGGTCGTAGTTTTCCCGCCCACAAGATTGTTCTGTGTGCTGCTTCACCATTTCTACTGGATTTGCTAAAGAACACTCCCTGCAAACATCCAGTAGTTATGTTGGCTGGTGTCAATGCCAATGACTTGGAGGCTCTGCTCGAGTTTGTCTATCGTGGTGAGGTGAGCGTTGATCACGCTCAATTACCCTCACTATTGCAGGCAGCTCAATGTTTGAACATACAAGTGGCGCCACAAACTGTGACCAAAGATGACTACACGCACTCGATACAATTGCAGCATATGATACCCCAACATCACCATgAACAAGACCAACTGATTGCGACCATTGCCACTGCACCCCAACAAACCGTACACGCTCAAGTTGTTGATGATATACACCAGGCTGGACAAATCTTACAGACTACGACTCAGACAAATGCGGCTACCGGACAACAGCAAACGATTTTGACCACTGATGCTACCAAGGATGTTATACAGCAATATTTACCGGCACGCAAACGTAAACCCAGAGTTAAGAAAATGTCACCCACGGCTCCTAAAATCAGCAAAGTTGAAGGCATGGAAACAATTATCAGCACTCCCACTTCTTCGCATACGGCCACTACTGTTCAAACTaaccaacagcagcaacaacaggttcaacaacaacagcagcaacaacaacaggcccaacagcagcagcagcaacaggtACAGCAACAACAggttcaacagcaacaacaaattgaAAACGGTACGGAAACGCAAATAATCACCTCGACACCCATCATTAAGAGTGAAGTGACAAAGGTGGAGACGATTGTTAGTATAGATCCGAATAGCAGCGGTGATGACATGGTAACGCCTAGCAAACCCGGAAAACGTACGAATACCAGTGGTGAAAAACCCCGCTCCCGATCCCAATCCGAACAACCGGCCACCTGTCCCATCTGTTATGCTGTCATCCGTCAATCTCGTAACTTGCGTCGTCACTTGGAACTGAGACATTTTGCCAAACCCGGCgttaaaaaggaaaagaaaaCGCCCGGCAAGAAAACCGCTATGGCAGTACCACCCGGCACGACAAACGCTTCTGGAACATCGACTGTGACCACGACAGCTACCACTGTGCCACAAGTACAATCCGTACAATCGTTGCACACCTTACAGACCGTACAAGTAAAGAAGGATCCTGATGCACaaaatcaacagcaacaacaacagcaacagcaaccaCAAACCATGACAGTGACAACGACCAATAAtggacaacaacagcaacatcaacagcagcagcaacaacaacagcagcaacaagtACAACAGGTGCAAGTGCAACAGacacaacaaatacaacaacatcATATAATAGATCAATCGGGTAATATATCAACTGCCACCACTACGGCCAACacacagcagcaacagcagaatcagcaacaacaacaacaacaacagcagcagcaacaacagccaCAACAAATTGTCACACAAACTGAGAATACTGATGGTACAACATCACTATCGATTGCTCAAGTCCAAACACTgcagggtcatcaaatcttgggCAATATCAATCAGGGCAACAATAAGAACATTTTGGTAAAGAaggttttcattttaaaagGCAGTAATAATACGTAA
Protein Sequence: MMALPMNSLYSLTWGDYGTSLVSAIQLLRCHGDLVDCTLAAGGRSFPAHKIVLCAASPFLLDLLKNTPCKHPVVMLAGVNANDLEALLEFVYRGEVSVDHAQLPSLLQAAQCLNIQVAPQTVTKDDYTHSIQLQHMIPQHHHEQDQLIATIATAPQQTVHAQVVDDIHQAGQILQTTTQTNAATGQQQTILTTDATKDVIQQYLPARKRKPRVKKMSPTAPKISKVEGMETIISTPTSSHTATTVQTNQQQQQQVQQQQQQQQQAQQQQQQQVQQQQVQQQQQIENGTETQIITSTPIIKSEVTKVETIVSIDPNSSGDDMVTPSKPGKRTNTSGEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGVKKEKKTPGKKTAMAVPPGTTNASGTSTVTTTATTVPQVQSVQSLHTLQTVQVKKDPDAQNQQQQQQQQQPQTMTVTTTNNGQQQQHQQQQQQQQQQQVQQVQVQQTQQIQQHHIIDQSGNISTATTTANTQQQQQNQQQQQQQQQQQQQPQQIVTQTENTDGTTSLSIAQVQTLQGHQILGNINQGNNKNILVKKVFILKGSNNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00921503;
90% Identity: iTF_00921503;
80% Identity: iTF_00922206;