Lser008393.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- -
- Assembly
- GCA_015586225.1
- Location
- NW:12352-18116[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00027 0.013 15.7 0.1 1 23 151 174 151 174 0.97 2 12 0.012 0.56 10.5 3.9 2 23 223 245 219 245 0.89 3 12 0.00091 0.043 14.0 0.5 1 23 380 403 380 403 0.95 4 12 0.099 4.6 7.6 0.1 1 23 555 578 555 578 0.89 5 12 0.00092 0.043 14.0 2.4 2 23 629 651 629 651 0.97 6 12 0.00015 0.0069 16.5 0.8 1 23 770 793 770 793 0.97 7 12 7.8e-05 0.0037 17.4 0.1 1 23 843 866 843 866 0.95 8 12 0.0011 0.051 13.7 1.1 2 23 916 938 915 938 0.95 9 12 0.058 2.7 8.3 2.2 1 23 1029 1052 1029 1052 0.91 10 12 0.81 38 4.7 0.7 1 20 1104 1123 1104 1125 0.94 11 12 0.03 1.4 9.2 0.0 2 23 1208 1230 1207 1230 0.95 12 12 3.2 1.5e+02 2.8 5.5 2 23 1280 1302 1279 1302 0.94
Sequence Information
- Coding Sequence
- ATGGATAATTTAGAACCCTGGAATATGTTTACCAATGATTTTGAGCCAGATGAGGGCAATATGGATGAGGCTACTGTGGAAAATGAAGATGAGGAAGGTGATGGTGGTGAAGATGTGCCATTTAGTATACCCTCACCAGTGCAGGATATGCAGGTTAAAGAAGAGCCTCAAGAGGCTGCCGAAGAAATGTTCGATGACGATAACGACAACAATATTCCATTACACTTTCTCTCTGACGCTGCcaataacaatgaaaacaaTAACGAAGATGACAGTCGTATTCGCAATCGTGAAGAGGATGATGCCCTCTTTGATTTCGGTTTAGAATCATCAAATTCACAAAATCGTTCTCTGTTCAATAAATTCTCAGTAAACGACAAAGATTATCCGAATTTAACGCCGGAAGACCAATACTACAATGCTATGGTCAAATTCGAAGATGCTGTTATTTATATATGCCCGGCCTGTGGGCATGAATTTAGTTCCCAAGATGCCTGGAAAAATCACTTGAACGTTATACATCTTTTCAATACACGTCGTGGCTTAAATTTCATACAACTCGATAAACTCTATCATGAATGCATGGAATGTCATAAACGTATCGCTATGCACAGTATGGAGAATTTACTTAAGCATAAATTCACCCATTTACCGTTTAGATGTAGCAAATGTATGGTGTGCAAGCGTCAGTATAAATATCGTCAAGATCTTATGGTGCATTTGCGAATGACCCACCGTGACGATTTGATTGCTCTGCTTAAAAAGGAACATACGAAAACTAAGAATGCGAATACACAGCCGCAAACTATACGCTCAATATTAAGTCGCTCAGACGGCAGCGGAGGACCTCAAAATAGTGCCAGACCTAAAATATCGATTGGTATGGTTAAGGAGAATGCTACAGATTTATTTGATAATATTGAAGTGAAAAATGAAGTACTCAATGAGGATGAAGAGGATGATATGATGGGCGATGATAGTCAACCACCGCCAGCAAAAAGGCCTGCTATGGAATTGCCCGCATTTCTGGATGACGGTTCTACAAATGGTTCAGCGCCCGATCAAACATTAACAAGTCGTCCAAATAAATCTTCTGCGGCAGATGAAATAGATGCTTCATTGGAAGAGTATGTTCTATTCACTTGTCCCCAATGTGGTACCGAGTGTGAGACACAAGCACAGTGGCGTCAACATATTGAATATGTACATGAATTTGGTACAAGAAGGGGTCTGAATTTTCGCGAACTGCTTAATCAGCAGGCTCAGTGTATGGGTTGCAATGTGATCCTCTCAAACTCTTCTATACGCAGTCtacaaatacataaattcaGTCATTTACCCTACAAAAAATGGATGAGTTGTAAACTTTGCTTCGATTCTTTTAATGTAAATCGCGATATTGTCAAACATTTGGCCGCTAAACATCATTTGGTTTCGGAAAATAATACACGAGCAACTGCTGCACAAAATAACGATGACGATAGTCAAGAAGCATTTGGCTTTGGTGGTGGCGGCGGAGGTGGCTTTGCGGATGATTATGATGAtggcggtggtggtggtggaggtGGTTATGGAACGTCAGATAGTAAAAATGTATCAGCAGGACCGGATGCCTATACTTCGAGATTAGAGGAACGTGATGTCTTCGAACAGCATATAACGTACATTTGTCCAGCGTGTGGTAAGGAATATAATGATAAGAAAATATGGCGTAAACATATTGTAGAGATACATAAATTGGGtgaattagaaaatttaaattttgaaaatatcaaTGATCGCCAATTGAAGTGTAGGGAATGTGATAAGATTATAACGAATGCCTATGGCATACAAAATGCCCAACAGCATCGTATGACTCACATGCAGTATAAATCGTTTGCCAAGTGTCGTTTATGTCGTAAAACCTATACCGATCGTAAGGGTTTAATCAAACACTTGAGAAACTCTCATAAATTGGGAGCAAGAGGACCAGGAGGTTTTGGACAAATTAATCCTGTACCACCAGCAGGAGCGACAAATTACGGCAGTAGCGGTGGCACTGGCAGTGGGGCTAATAGTTTCAAACCATTTGTCaaaaaaccctataaaataGCTCACTATCCTCCTAAGGAAATTGTAAGACTTTCAAATTATACCTATGAAATTGTACATTTAATTGAagacgatgatgatgacgacgatgtaACCGTAGTGGGTGGCTATGATTTCGCCAAAGGTGATGCTcatttatatcaaaataataATTCCCCTTATAGTACACCGCCAAAAAAGAGTAGTAATAGTAATATGGAACAAATTACTCGACATAAATGTGTCGACTGTGGTTCCATATTCCCCACACCTCAAGCTTTACAACATCACATTAGACAGGAACATGATTTTGTTGATTATCAAAGTTCTTCCTCGAATCAGGGCACACAGCAAACTGAGGAAAAATCCAATGACACGGATGATTTATTAGTGCCCAGTCGGGATGTTGATGTTCAGCCTGACGATCACACAACCATGGactgtaattttatttatctatgtCCTCAATGTGGCTTAGAATTTCGCTCACAAATCCAGTGGCGTCGTCATATTAATGTTGAGCATAACTTTGATAAACGTGAATATTTGGGTTTCCGTGCTTTGGATAAATTTCGTTATCAGTGCAAACAATGTAAAGATACCGTGACTAGTTCAAAGCTTAAGGGTCTGCAGGATCATAAATTCCGTCATTGTCCTTATAAACTCTATTTGAAGTGTCTGCTGTGCGGCCAATCGTATAATCATAAACCCAATATGATTGCTCACTTACGACAAAGACACAACATAGTAGAACTTGCGGAAGGAGCAAGCGGAGGAGCAGCAGGAGGTGGAGGAAGTGGTGGTGGCGGTTCTTCTATGGAATCGAAACAGCAAAGATATTCATCAAATTTACATACAAGCAGCTCTACTTCTAAGGAATTTAATGATGCTCCCGCTAGACCTATACGACATACTGATCCTTCTACTAACAATACTAATCGACCACCTGGTTTGAAAACTGTCGAAGATGTTATATCTTTTCACAATGCCGTAGATCATGAAACTATTACCTATCACTGTCCCTCATGCAATCAAAGTTTCGATTCCCATGTCTTTTGGCGTAAACACATTGTAGAAGAGCATAATTTGAATAGTCGCGAAGGTTTGAATTTCCGGCAATTGGATGAACATCATTACATTTGCTTGCAGTGCTATAAAAGAGTCACGGTCACACACACCAAGGGCGCTATAGGACAATTGCAATCGCATAAATTCAGACATTTGCCATACAAATCGTTCAGCTGTACCGCCTGCCAGGGAGAGTTTGTACgtaaacaaatgtttttcaaacacttggataaaaacacaaacaaatgttCAGGCATTAATCCGGAAGCAAATTTTGCGGATGCAGGCGATACCAGCAGCGCCTTTAATAATGACGAAGAAAGTGGTGTTGATTTTAATGCTACTACTACGGAAACTGTCACTGGTGGTGGCAGTTCAGCTAAATTCTCTTGGCCTACACGCGCCTCACTGCCAGCCCAATCAACTAATGCGGCTAATTCCGGCGAATCAACTACCGAAAATCAGGGCTGTTTTACTTTAAATTGCCCCCAATGTGGAGCTGATTTCGATACTACACGCGGTTGGCGTGAACACATAAATATTGAACATAATCTCAATAATCGTACAGttttgaatttcaaaaaaatcagtGCCAAACTACACCTCTGTTTGGAATGCAATGAAACGGTAAATGGTCGCAAATTACGCGATCTGCAGGTGCATAAATTCAAGCACTTACCCTATGGCGCCTATTTACATTGTCGCTATTGTTCtatgaaatatttccatattagCAATATGCAAGAGCATTTAAAGAATAAACATCCCAATATGGtgcaaaaaatgaaaaactatgAAGACGATTGTGTCACACTCGATGAGGACGAGGATGGTAATGGAGAGGGAGGAAACAATGATGTTGAGGTGGCGGGCCTAGATGCTGAAGCGGAGGATAGTGAAACGGGTTTGGAAGATGTAGTCGATATAGATTTATTGGAGGCAGAGGCCGAAATTGAAGAAGTTGATCCCGATAATGTTGAATCTGATGAACAATATCTCTTAGGTTAA
- Protein Sequence
- MDNLEPWNMFTNDFEPDEGNMDEATVENEDEEGDGGEDVPFSIPSPVQDMQVKEEPQEAAEEMFDDDNDNNIPLHFLSDAANNNENNNEDDSRIRNREEDDALFDFGLESSNSQNRSLFNKFSVNDKDYPNLTPEDQYYNAMVKFEDAVIYICPACGHEFSSQDAWKNHLNVIHLFNTRRGLNFIQLDKLYHECMECHKRIAMHSMENLLKHKFTHLPFRCSKCMVCKRQYKYRQDLMVHLRMTHRDDLIALLKKEHTKTKNANTQPQTIRSILSRSDGSGGPQNSARPKISIGMVKENATDLFDNIEVKNEVLNEDEEDDMMGDDSQPPPAKRPAMELPAFLDDGSTNGSAPDQTLTSRPNKSSAADEIDASLEEYVLFTCPQCGTECETQAQWRQHIEYVHEFGTRRGLNFRELLNQQAQCMGCNVILSNSSIRSLQIHKFSHLPYKKWMSCKLCFDSFNVNRDIVKHLAAKHHLVSENNTRATAAQNNDDDSQEAFGFGGGGGGGFADDYDDGGGGGGGGYGTSDSKNVSAGPDAYTSRLEERDVFEQHITYICPACGKEYNDKKIWRKHIVEIHKLGELENLNFENINDRQLKCRECDKIITNAYGIQNAQQHRMTHMQYKSFAKCRLCRKTYTDRKGLIKHLRNSHKLGARGPGGFGQINPVPPAGATNYGSSGGTGSGANSFKPFVKKPYKIAHYPPKEIVRLSNYTYEIVHLIEDDDDDDDVTVVGGYDFAKGDAHLYQNNNSPYSTPPKKSSNSNMEQITRHKCVDCGSIFPTPQALQHHIRQEHDFVDYQSSSSNQGTQQTEEKSNDTDDLLVPSRDVDVQPDDHTTMDCNFIYLCPQCGLEFRSQIQWRRHINVEHNFDKREYLGFRALDKFRYQCKQCKDTVTSSKLKGLQDHKFRHCPYKLYLKCLLCGQSYNHKPNMIAHLRQRHNIVELAEGASGGAAGGGGSGGGGSSMESKQQRYSSNLHTSSSTSKEFNDAPARPIRHTDPSTNNTNRPPGLKTVEDVISFHNAVDHETITYHCPSCNQSFDSHVFWRKHIVEEHNLNSREGLNFRQLDEHHYICLQCYKRVTVTHTKGAIGQLQSHKFRHLPYKSFSCTACQGEFVRKQMFFKHLDKNTNKCSGINPEANFADAGDTSSAFNNDEESGVDFNATTTETVTGGGSSAKFSWPTRASLPAQSTNAANSGESTTENQGCFTLNCPQCGADFDTTRGWREHINIEHNLNNRTVLNFKKISAKLHLCLECNETVNGRKLRDLQVHKFKHLPYGAYLHCRYCSMKYFHISNMQEHLKNKHPNMVQKMKNYEDDCVTLDEDEDGNGEGGNNDVEVAGLDAEAEDSETGLEDVVDIDLLEAEAEIEEVDPDNVESDEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01259649;
- 90% Identity
- iTF_00921683;
- 80% Identity
- -