Lcup009036.1
Basic Information
- Insect
- Lucilia cuprina
- Gene Symbol
- -
- Assembly
- GCA_001187945.1
- Location
- JRES01000091.1:35789-41294[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00019 0.013 15.7 0.1 1 23 151 174 151 174 0.97 2 12 0.0083 0.55 10.5 3.9 2 23 223 245 219 245 0.89 3 12 0.00064 0.042 14.0 0.5 1 23 380 403 380 403 0.95 4 12 0.0079 0.53 10.5 0.1 1 23 556 579 556 579 0.91 5 12 0.00064 0.043 14.0 2.4 2 23 630 652 630 652 0.97 6 12 0.00062 0.041 14.0 0.3 1 23 773 796 773 796 0.96 7 12 5.5e-05 0.0036 17.3 0.1 1 23 846 869 846 869 0.95 8 12 0.00077 0.051 13.7 1.1 2 23 919 941 918 941 0.95 9 12 0.04 2.7 8.3 2.2 1 23 1033 1056 1033 1056 0.91 10 12 0.56 38 4.7 0.7 1 20 1108 1127 1108 1129 0.94 11 12 0.021 1.4 9.2 0.0 2 23 1212 1234 1211 1234 0.95 12 12 2.2 1.5e+02 2.8 5.5 2 23 1284 1306 1283 1306 0.94
Sequence Information
- Coding Sequence
- atggACAATTTAGAACCCTGGAATATGTTTACCAATGATTTTGAGCCAGATGAGAGCAATATGGATGATGCGACTGTGGAAAATGAAGATGAGGAAGGTGACGGTGGTGAAGATGTGCCATTTAGTATACCCTCACCAGTACAGGATATGCAGGTTAAAGAAGAGCCTCAAGAGGCTGCCGAAGAAATGTTCGATGATGATAATGACAACAATATTCCATTACACTTTCTCTCTGATGCTGCcaataacaatgaaaacaataacGAAGACGACAGTCGTATTCGCAATCGCGAAGAGGATGATGCCCTCTTTGATTTCGGTTTAGAATCATCAAATTCTCAAAATCGTTCtttattcaataaattctcaGTAAACGACAAAGATTATCCGAATTTAACGGCAGAAGACCAATACTACAATGCTATGGTCAAATTCGAAGATGCAGTCATTTATATATGCCCGGCCTGCGGTCATGAATTCAGTTCCCAAGATGCCTGGAAAAATCACTTGAATGTTATACATCTTTTTAATACACGTCGTGGCTTAAATTTCATACAACTCGATAAACTCTATCATGAATGCATGGAATGCCATAAACGTATTGCTATGCACAGTATGGAGAATTTACTCAAGCATAAATTTACCCATTTACCGTTTAGATGTAGCAAATGTATGGTGTGCAAGCGTCAGTATAAATATCGTCAAGATCTTATGGTGCATTTGCGAATGACCCACCGTGACGATTTGATTGCTCTGCTTAAAAAGGAACATACAAAAACTAAGAATGCCAATACACAGCCGCAAACAATACGCTCAATATTGAGTCGCTCAGATGGCAGCGGAGGACCTCAAAATAATGCCAGACCTAAAATATCGATTGGTATGGTTAAGGAGAATGCTACAGATTTATTTGATAACATTGAAGTGAAAAATGAAGTACTCAATGAAGATGAGGAGGATGATATGATGGGCGATGATAGTCAACCACCGCCAGCCAAAAGGCCAGCTATGGAATTGCCCGCATTTCTGGATGATGGTTCTACAAATGGTTCAGCGCCCGATCAAACGTTAACAAGTCGTCCAACTAAATCTTCTGCAACAGATGAAATAGATGCTTCATTGGAAGAGTATGTTCTATTCACTTGTCCCCAATGTGGTACCGAGTGTGAGACACAAGCTCAGTGGCGTCAACATATTGAATATGTACATGAATTTGGTACAAGAAGGGGTTTGAATTTTCGTGAACTTCTTAATCAACAGGCTCAGTGTATGAGTTGTAATGTGATCATTTCAAACTCTTCTATACGCAGTCTACAAGTACATAAATTCAGTCATTTACCCTACAAAAAATGGATGAGTTGTAAACTTTGTTTTGATTCTTTTAATGCAAATCGCGATATTGTCAAACATTTGGCCGCTAAACATCATTTGGTTTCGGAAAATAATACACCAGCAGCTGCAGCACAAAATAACGATGACGATAGTCAAGAAGCATTTGGTTTTGGTGGTGGCGGCGGAGGTGGCTTTGCGGATGATTATGAAGATggtggaggtggtggtggtgggGGTGGTTTTGGAACGTCAGATAGTAAAAATATATCAGCAGGACCGGATGTCTATACTACGAGATTAGAGGAACGTGATGTCTTCGAACAGCATATAACGTATATTTGTCCAGCATGTGGTAAGGAATATAATGATAAGAAAGTATGGCGTAAACATATTGTAGAGATACATAAGTTGGGtgaattggaaaatttaaattttgaaaatataaacgaTCGTCAATTGAAGTGTAGGGAATGTGATAAGATTATAACGAATGCCTATGGCATACAGAATGCTCAACAGCATCGTATGACTCACATGCAGTATAAATCGTTTGCCAAGTGTCGTTTATGTCGTAAAACCTATACCGATCGTAAAGGTTTAATCAAACACTTGAGAAACTCTCATAAATTGGGAGCAAGAGGGCCAGGCTATGGACAAATTAATCCAGTACCATCGGCAGCAGCCACAAATTACGGCAGCAGCAGCGGTGGCGGTGGCGCTGGCAGTGGGGCTAATACCTTTAAACCATTCGTCAAAAAACCCTATAAAATAGCTCACTATCCTCCTAAGGAAATTGTAAGACTTTCAAATTATACCTATGAAATTGTACATTTAATTgaagacgatgatgatgatgacgatgtaaCCGTAGTGGGTGGCTATGATTTCGCCAAAGGTGATGCtcatttatatcaaaataataattccCCATATAATACACCTCCAAAAAGAAGTAGTAATAGTAATGTGGAACAAATTACGCGACATAAATGTGTCGACTGTGGTTCCATTTTTCCCACACCGCAAGCTTTACAATATCACATTAAACAGGAACATGATTTTGTTGATTATCAAAGTTCTTCCTCGAATCAGGGCACTCAGCAAAATGAGGAGAAATCTAATGATACGGATGATTTATTAGTGCCCAGTCGGGATGTTGATGTTCAGCCTGACGATCACACAACCATGgactgtaattttatttatctatgtCCTCAATGTGGTTTAGAATTTCGCTCACAAATCCAGTGGCGTCGTCATATTAATGTTGAACATAACTTTGATAAACGTGAATATTTGGGCTTTCGTGCTTTGGATAAATTTCGTTATCAGTGTAGACAATGCAAAGACACAGTGACTAGTTCAAAACTTAAGGGTCTGCAGGATCATAAATTTCGTCATTGTCCttataaactttatttgaaGTGTCTGCTGTGCGGCCAATCGTACAATCACAAACCCAATATGATTGCCCATTTGCGACAAAGACACAACATAGTAGAACTTGCGGATGGATCGGGGGGAGCAGCAGGAAGTGGAGGAGGTGGTGGCAGTGGTGGCGGTTCCTCTATGGAATCAAAACAGCAAAGATATTCctcaaatttacatacaaacagcTCTACTTCTAAGGAATTTAATGATGCCCCCGCTAGACCTATACGACATACCGATCCTTCTACTAACAACACAAATCGACCACCGGGTTTGAAAACTGTCGAAGATGTTATATCTTTTCACAATGCCGTAGATCATGAAACTATAACGTATCATTGTCCCTCATGCAATCAAAGTTTCGATTCTCATGTCTTTTGGCGTAAACACATTGTAGAAGAGCACAATTTGAATAGTCGCGAAGGTTTGAATTTCCGACAATTGGATGAACATCATTACATTTGTTTGCAGTGCTATAAAAGAGTCACGGTCACGCACACCAAGGGCGCTATTGGACAATTGCAATCGCATAAATTTAGACATTTGCCATATAAATCATTCAGCTGTACCGCCTGCCAGGGAGAGTTTGTACGTAAGCAAATGTTTTTCAAACACTTGGataaaaacaccaacaaatGTTCGGGCATTAATCCGGAAGCTAGTTTTATGGATGGTGGCGATACTAGCAGCGCCTTTAATAATGACGAAGAAAGTGGTGTTGATTTTAATACGACTACTACGGAAACTGCCACTGGTGGTGGCAGTTCAGCTAAATTCTCTTGGCCTACACGCGCCTCACTGCCAGCCCAATCAACTAATGCGGCGAATTCCAGTGAATCAACTACCGAAAATCAGGGCTGTTTTACTTTGAATTGTCCCCAATGTGGAGCTGATTTCGATACTACACGCGGTTGGCGTGAACACATAAATATCGAACATAATCTCAATAATCGTACagtgttaaatttcaaaaagatcAGTGCCAAACTACACCTCTGTTTGGAATGCAATGAAACGGTAAATGGACGCAAATTACGCGATCTACAGGTGCATAAATTCAAGCACTTACCCTATGGCGCCTATTTACATTGTCGCTATTGTTCTATGAAATATTTCCATATTAGCAATATGCAAGAGCATTTAAAGAATAAACATCCCAATATGgtgcaaaaaatgaaaaactatgaAGATGATTGTGTTACACTCGATGAGGATGACGAGGGTAATGGCGAGGGAGTAATAAACAACAATGATTTAGAGGCGTCAGGCCTAGATGCTGAGGCGGATGATAGTAGTGCTGGTTTGGAAGATGTAGTCGATATAGATTTATTAGAGGCAGAGGCCGAAATTGAAGAAGTTGATCCCGATAATGTTGAATCTGATGAACAATATCTTTTAGGTTAA
- Protein Sequence
- MDNLEPWNMFTNDFEPDESNMDDATVENEDEEGDGGEDVPFSIPSPVQDMQVKEEPQEAAEEMFDDDNDNNIPLHFLSDAANNNENNNEDDSRIRNREEDDALFDFGLESSNSQNRSLFNKFSVNDKDYPNLTAEDQYYNAMVKFEDAVIYICPACGHEFSSQDAWKNHLNVIHLFNTRRGLNFIQLDKLYHECMECHKRIAMHSMENLLKHKFTHLPFRCSKCMVCKRQYKYRQDLMVHLRMTHRDDLIALLKKEHTKTKNANTQPQTIRSILSRSDGSGGPQNNARPKISIGMVKENATDLFDNIEVKNEVLNEDEEDDMMGDDSQPPPAKRPAMELPAFLDDGSTNGSAPDQTLTSRPTKSSATDEIDASLEEYVLFTCPQCGTECETQAQWRQHIEYVHEFGTRRGLNFRELLNQQAQCMSCNVIISNSSIRSLQVHKFSHLPYKKWMSCKLCFDSFNANRDIVKHLAAKHHLVSENNTPAAAAQNNDDDSQEAFGFGGGGGGGFADDYEDGGGGGGGGGFGTSDSKNISAGPDVYTTRLEERDVFEQHITYICPACGKEYNDKKVWRKHIVEIHKLGELENLNFENINDRQLKCRECDKIITNAYGIQNAQQHRMTHMQYKSFAKCRLCRKTYTDRKGLIKHLRNSHKLGARGPGYGQINPVPSAAATNYGSSSGGGGAGSGANTFKPFVKKPYKIAHYPPKEIVRLSNYTYEIVHLIEDDDDDDDVTVVGGYDFAKGDAHLYQNNNSPYNTPPKRSSNSNVEQITRHKCVDCGSIFPTPQALQYHIKQEHDFVDYQSSSSNQGTQQNEEKSNDTDDLLVPSRDVDVQPDDHTTMDCNFIYLCPQCGLEFRSQIQWRRHINVEHNFDKREYLGFRALDKFRYQCRQCKDTVTSSKLKGLQDHKFRHCPYKLYLKCLLCGQSYNHKPNMIAHLRQRHNIVELADGSGGAAGSGGGGGSGGGSSMESKQQRYSSNLHTNSSTSKEFNDAPARPIRHTDPSTNNTNRPPGLKTVEDVISFHNAVDHETITYHCPSCNQSFDSHVFWRKHIVEEHNLNSREGLNFRQLDEHHYICLQCYKRVTVTHTKGAIGQLQSHKFRHLPYKSFSCTACQGEFVRKQMFFKHLDKNTNKCSGINPEASFMDGGDTSSAFNNDEESGVDFNTTTTETATGGGSSAKFSWPTRASLPAQSTNAANSSESTTENQGCFTLNCPQCGADFDTTRGWREHINIEHNLNNRTVLNFKKISAKLHLCLECNETVNGRKLRDLQVHKFKHLPYGAYLHCRYCSMKYFHISNMQEHLKNKHPNMVQKMKNYEDDCVTLDEDDEGNGEGVINNNDLEASGLDAEADDSSAGLEDVVDIDLLEAEAEIEEVDPDNVESDEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01259649;
- 90% Identity
- iTF_00922493;
- 80% Identity
- -