Basic Information

Insect: Lucilia sericata
Gene Symbol: -
Assembly: GCA_015586225.1
Location: NW:9996-15482[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 7 3.3e+02 1.8 0.8 2 19 457 474 456 477 0.92

2 17 0.33 16 5.9 0.4 1 23 486 510 486 511 0.93

3 17 0.00079 0.037 14.2 2.4 2 19 523 540 522 542 0.95

4 17 0.17 7.9 6.9 0.6 2 23 584 606 583 606 0.94

5 17 0.95 44 4.5 0.2 5 23 616 634 613 634 0.92

6 17 7.3e-05 0.0034 17.5 0.3 1 23 641 664 641 664 0.94

7 17 0.00018 0.0082 16.2 0.5 2 23 672 693 671 693 0.97

8 17 0.81 38 4.7 0.1 1 20 702 721 702 723 0.93

9 17 0.11 5.1 7.5 2.3 1 22 743 764 743 767 0.91

10 17 0.0038 0.18 12.0 1.6 1 23 772 794 772 794 0.96

11 17 0.31 14 6.0 1.1 1 20 847 866 847 868 0.94

12 17 0.00045 0.021 15.0 3.3 2 23 876 898 875 898 0.95

13 17 0.00011 0.0049 16.9 1.3 2 23 902 924 901 924 0.95

14 17 0.049 2.3 8.6 3.1 1 23 930 953 930 953 0.96

15 17 0.00055 0.026 14.7 0.5 1 23 958 980 958 980 0.98

16 17 1.7e-05 0.0008 19.4 2.7 1 23 986 1008 986 1008 0.99

17 17 0.046 2.2 8.6 0.2 5 23 1024 1043 1014 1043 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	7	3.3e+02	1.8	0.8	2	19	457	474	456	477	0.92
2	17	0.33	16	5.9	0.4	1	23	486	510	486	511	0.93
3	17	0.00079	0.037	14.2	2.4	2	19	523	540	522	542	0.95
4	17	0.17	7.9	6.9	0.6	2	23	584	606	583	606	0.94
5	17	0.95	44	4.5	0.2	5	23	616	634	613	634	0.92
6	17	7.3e-05	0.0034	17.5	0.3	1	23	641	664	641	664	0.94
7	17	0.00018	0.0082	16.2	0.5	2	23	672	693	671	693	0.97
8	17	0.81	38	4.7	0.1	1	20	702	721	702	723	0.93
9	17	0.11	5.1	7.5	2.3	1	22	743	764	743	767	0.91
10	17	0.0038	0.18	12.0	1.6	1	23	772	794	772	794	0.96
11	17	0.31	14	6.0	1.1	1	20	847	866	847	868	0.94
12	17	0.00045	0.021	15.0	3.3	2	23	876	898	875	898	0.95
13	17	0.00011	0.0049	16.9	1.3	2	23	902	924	901	924	0.95
14	17	0.049	2.3	8.6	3.1	1	23	930	953	930	953	0.96
15	17	0.00055	0.026	14.7	0.5	1	23	958	980	958	980	0.98
16	17	1.7e-05	0.0008	19.4	2.7	1	23	986	1008	986	1008	0.99
17	17	0.046	2.2	8.6	0.2	5	23	1024	1043	1014	1043	0.82

Sequence Information

Coding Sequence: ATGGCGGTTAATGTTTCCACAACCATCAGTGTCTGTTTATATTGTAAAACAACATCCGAGAGAGATGCTGCAAAGGAATTTCATGAGATCTTTGATGAAGTGGGAGTTGAATTGCAATTGCCCACTTTAGTggaaaagttttttcatattaAGGTTGAAAATGAAGATAAACAATGTTTGTGTGACGATTGTGTTAATAATTTAATCGAATTATATGACTTGGAAGAACACACCAAACAAGAACAGAGCAAGGAGGAAGAATCTCTTGGGGTAAATATTCAGCCGGAAGCTGAAGAGAAGGAAAATAGTAAAGTAGCTTCAGCGGATGAATTTGAGAAATTGAATCCAGAATATCTGAAATGTACTAACGATCTTGTACAACAAGATGTTGAACAGCAAGTCATTTTGCCCGAGAGTTTAAGCAGCGagtatagaaatataaaaattattgaacaGGAGGATAAAGACAGGGCAAGTGTGCAAGAAAATGTGACAGAAGAGAAAGATAACAACGAAGAACTCTTTAAAGAAGATAAAACTGCTTACTATGCTGAAGAAGCTGTTAATAGtactgaaaatttaataaataatttggaAATTGAGAATGATGAACAATCCTTTAATAACATAATAGCTAGTACTACAGTAGATGTGCCAAATGCAGGTGAAGAAGAATGTTCTGAAGATATTGTGTTTGTGGAAGATGAAGAGGAACATCAAAATAATTCTAACATTCTAATTGGTACTCACATATCTTCCGAAGAATTTGAGCTAACGGGTGAGCATGAAAATGATGAGGAAATTGAGGAAGATGAACAAAATTCAGAGAATCATTTCACATATGATGATGAAAATGAGTTTATAGAAGAACCTCAACAGGAAGATAATGAAGTTAATAAATCTATATTGGAATTTAGTACAACAAATACAGCTACGGACGAAAATGAAACATCAACTAAGGATGCTGTAGACGACGAAGAACTTGAACTTGTTTACTATGAAGAAGATGTACCAAGTGATAATGAAAAAGAAGGTGAAAGTAATGAAACGGTATTGGAAGATTTGGAAATTATTAATAAGGAATTAAAGTCTTTGCAAACAGAAAATGAAAGTACTGTGGATTTAGATACTGAAtcattaaattcaaatatttctgACAGAGTTAACATTAATAAAGATACCATTGATGCGGAAAAAGCTATAGAAAATGATGAGGATGATCCTCAGGAGGATACCTATTCCTTGGAAGAGGAGTATTTAGTTGAAGATATTTTTTGTTCTCAAGAGTACGATACTGTTGATCTAAACGATTATTTGGATAAAGTGTTAGTAacaaaatttcaagatttacaATTGGATTGGGATGTGGAATGTGAATTGTGCCATGACAAATACAATAACTTACCAGAATTATTAAAACACAACTGCGTAACAGATTTCGAGGAAGAACAACAGTATCGTTGTGTTTTTAAGGATTGTGGAGAAGATATAAATAATTTGCAGACCTTAGCCAGGCATTTGGTTTTACATCACTATGACAAATTGGAAAGcACCATTATATATAGCAAATGTCCAGATTGTCAGAAAACATTTTCGAACTTTATTGAATTGAATAAACACTCCTGTTGCCGTAATATCAAGAAAAAAACTGGAGCTCCCAATCATTGTCAATCATGTAATTTGGATTTTCAGTCCTTGAAAAGATTTGTTTTTCATATGCAATTCCATTTGACGAATCATCGACCAAAGGTTTGCCTAATGTGTGGTGCTTTATTTAATAACTCCAATGATTTCTTTGAACATACTCAATATAAACATAATCCAGCGACGGCTATGGCTTGTATAGAATGTGATagattctttaaagaaaaagagGTCTTTGACAGCCATATGGAATTGCATGAGGAATCTAAATATCAATATGCCTGCAGCTATTGTCCAAAAAAGTATACCAATAAAGCGGGTTTAAATCAGCATGTAgatATTTATCACAATAACAAATCCTCTGCTATACAGTGtgatttttgtgaaaaagaGTTTGTTAATCAGGCCTCGTATCGTAATCATGTTAAGTCACATGCTGCTGATGTACAAATAGAAACTTATATCTGTTCAACGTGTGGTTTTATAACCAATGATTGTGATTTAATTAAGGAACACATTGAAGCAGATGCCGAATCCCCTTGTTATTCTTCGCCACTGGAAGAAAAACTATTGGCTTTGGGTTATACTTGTGAGAATTGTTCCATTGATTTTCATACCATTAAACAGCTGAAGGAACATCGTTTGAGTAAAAACCATAGAGATACTTTGTATTATTGTGGCATTTGTCGTCGAGCTTTTAACTCACTACGTCATATGCGTAATCATGCTATTAAtcataaagattttgaaaaatggcAGGAAGCTTTTCCTATAACGCGTTATTTTGTATGCAATATAGgtGATTGCCAAGAATTTTATCCCATTTGGACTTCCCTGTATTATCAAAAACGTCCGCATAAAAGTAAGGAAGCTAAAGACGATAAACCTGCGGAGTTTAAGTGTCAATTCTGTCAACAATTGTGTACTTCGAAAATGTCTTTGGCTGTTCATGTAGCTAGAAGTCAGAATACAGCAAATATATCTTGTTCTCACTGCAAACGTACCTATAAGACTCAAAAACTGCTGCAAGAACATATAGATAAATTCCATACAGCCATAAAATGtgaagtttgttttaaaaatttcaaaaatcgaCGAAATTTGGAATCACATCGTAATTTGGTGCATCTTAATATGAAACGTTATTTCTGTCAATATTGTGAAAAGGGCTATTTTCATAAAAGTGAAAAAGAAGCGCATGAAAAGAAAGTGCATTCCGAATTTCCCTATAAATGTGAAATTTGTGATTTCATGACGAACTATGAAAAATCTTTGGAAGTTCATATGGATAAACATAAtaatcaacaaaaatttaaatgtacaaTTTGTAGTAAAACATTTGGCAGAAAACAACTCTTAACCATACATACGAAAAGGCATCAAAATAAGAAAGAaTACATATGTTCCAATTACTTAAATGAAGATGGCTGTAGTGCAGCATTCTATACCTATAATCTTTTAAAGACACATATTCAAACTAAACATCAAAATGATAACAAACGTAAAAGatcacacaaaaaatatattgtacaaGTTGATGATAAAtcatatgaaatatttaatgttgATGAAGAGAGTACACAACAAGTTAAACGTTCGAAAACTGTAGCTTCGGAAGATAATAGTGAAAAATTTGAACAGGATGCTATTGAGTTGGTATTGGAAGAAGATGACATAGAATCATCACATGAGCAGACATCTGATGAATTCGAAACAATATGTAGTTAA
Protein Sequence: MAVNVSTTISVCLYCKTTSERDAAKEFHEIFDEVGVELQLPTLVEKFFHIKVENEDKQCLCDDCVNNLIELYDLEEHTKQEQSKEEESLGVNIQPEAEEKENSKVASADEFEKLNPEYLKCTNDLVQQDVEQQVILPESLSSEYRNIKIIEQEDKDRASVQENVTEEKDNNEELFKEDKTAYYAEEAVNSTENLINNLEIENDEQSFNNIIASTTVDVPNAGEEECSEDIVFVEDEEEHQNNSNILIGTHISSEEFELTGEHENDEEIEEDEQNSENHFTYDDENEFIEEPQQEDNEVNKSILEFSTTNTATDENETSTKDAVDDEELELVYYEEDVPSDNEKEGESNETVLEDLEIINKELKSLQTENESTVDLDTESLNSNISDRVNINKDTIDAEKAIENDEDDPQEDTYSLEEEYLVEDIFCSQEYDTVDLNDYLDKVLVTKFQDLQLDWDVECELCHDKYNNLPELLKHNCVTDFEEEQQYRCVFKDCGEDINNLQTLARHLVLHHYDKLESTIIYSKCPDCQKTFSNFIELNKHSCCRNIKKKTGAPNHCQSCNLDFQSLKRFVFHMQFHLTNHRPKVCLMCGALFNNSNDFFEHTQYKHNPATAMACIECDRFFKEKEVFDSHMELHEESKYQYACSYCPKKYTNKAGLNQHVDIYHNNKSSAIQCDFCEKEFVNQASYRNHVKSHAADVQIETYICSTCGFITNDCDLIKEHIEADAESPCYSSPLEEKLLALGYTCENCSIDFHTIKQLKEHRLSKNHRDTLYYCGICRRAFNSLRHMRNHAINHKDFEKWQEAFPITRYFVCNIGDCQEFYPIWTSLYYQKRPHKSKEAKDDKPAEFKCQFCQQLCTSKMSLAVHVARSQNTANISCSHCKRTYKTQKLLQEHIDKFHTAIKCEVCFKNFKNRRNLESHRNLVHLNMKRYFCQYCEKGYFHKSEKEAHEKKVHSEFPYKCEICDFMTNYEKSLEVHMDKHNNQQKFKCTICSKTFGRKQLLTIHTKRHQNKKEYICSNYLNEDGCSAAFYTYNLLKTHIQTKHQNDNKRKRSHKKYIVQVDDKSYEIFNVDEESTQQVKRSKTVASEDNSEKFEQDAIELVLEEDDIESSHEQTSDEFETICS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00922387; iTF_00921623;
90% Identity: iTF_00922387;
80% Identity: -