Basic Information

Insect: Lucilia cuprina
Gene Symbol: -
Assembly: GCA_001187945.1
Location: JRES01001578.1:428623-434613[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 8.3 5.5e+02 1.0 0.5 2 19 447 464 446 467 0.91

2 18 2 1.3e+02 3.0 0.5 4 23 481 500 476 501 0.86

3 18 0.00054 0.036 14.2 2.4 2 19 513 530 512 532 0.95

4 18 0.17 11 6.3 0.6 2 23 574 596 573 596 0.94

5 18 0.94 63 4.0 0.2 5 23 606 624 603 624 0.92

6 18 5e-05 0.0033 17.5 0.3 1 23 631 654 631 654 0.94

7 18 0.00012 0.0081 16.3 0.5 2 23 662 683 661 683 0.97

8 18 0.31 21 5.5 0.1 1 20 692 711 692 713 0.94

9 18 0.075 5 7.5 2.3 1 22 733 754 733 757 0.91

10 18 0.0089 0.59 10.4 1.8 1 23 762 784 762 784 0.94

11 18 0.23 15 6.0 0.2 1 23 800 825 800 825 0.96

12 18 0.097 6.5 7.1 2.2 1 23 838 861 838 861 0.96

13 18 0.00031 0.02 15.0 3.3 2 23 867 889 866 889 0.95

14 18 7.2e-05 0.0048 17.0 1.3 2 23 893 915 892 915 0.95

15 18 0.034 2.2 8.6 3.1 1 23 921 944 921 944 0.96

16 18 0.00038 0.025 14.7 0.5 1 23 949 971 949 971 0.98

17 18 4.5e-06 0.0003 20.8 2.8 1 23 977 999 977 999 0.99

18 18 0.032 2.1 8.6 0.2 5 23 1015 1034 1005 1034 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	8.3	5.5e+02	1.0	0.5	2	19	447	464	446	467	0.91
2	18	2	1.3e+02	3.0	0.5	4	23	481	500	476	501	0.86
3	18	0.00054	0.036	14.2	2.4	2	19	513	530	512	532	0.95
4	18	0.17	11	6.3	0.6	2	23	574	596	573	596	0.94
5	18	0.94	63	4.0	0.2	5	23	606	624	603	624	0.92
6	18	5e-05	0.0033	17.5	0.3	1	23	631	654	631	654	0.94
7	18	0.00012	0.0081	16.3	0.5	2	23	662	683	661	683	0.97
8	18	0.31	21	5.5	0.1	1	20	692	711	692	713	0.94
9	18	0.075	5	7.5	2.3	1	22	733	754	733	757	0.91
10	18	0.0089	0.59	10.4	1.8	1	23	762	784	762	784	0.94
11	18	0.23	15	6.0	0.2	1	23	800	825	800	825	0.96
12	18	0.097	6.5	7.1	2.2	1	23	838	861	838	861	0.96
13	18	0.00031	0.02	15.0	3.3	2	23	867	889	866	889	0.95
14	18	7.2e-05	0.0048	17.0	1.3	2	23	893	915	892	915	0.95
15	18	0.034	2.2	8.6	3.1	1	23	921	944	921	944	0.96
16	18	0.00038	0.025	14.7	0.5	1	23	949	971	949	971	0.98
17	18	4.5e-06	0.0003	20.8	2.8	1	23	977	999	977	999	0.99
18	18	0.032	2.1	8.6	0.2	5	23	1015	1034	1005	1034	0.82

Sequence Information

Coding Sequence: ATGGCAGTTAATGTTTCCACAGCCATCagtgtttgtttatattgtaaaacaaCATCAGAGAGTGATGCTACAAAGGAATTTCATGAGATCTTTGATGAAGTGGGAGTGGAATTACAATTGCCCACTTTAGTGGAAAAGTTTTTTCGCATTAAGGCGAAGAATGAAGATAAACAAAGTTTGTGTGAAGattgtgttaataatttaatcgAGTTATATGACTTGGAAGAACACACCAAACAAGAACATGGCAAGGCGGAAAATTCTCTTGGGGTAAATGTTCAGCCGGAAGCTGAAGAAGAGAAAAATAGTGAAGTAGCTTGTACAGAAGAAGTTGAGAAACTAAATCCTGAATATCTACTGAAATGTACAAAGCAACTTGTAAAAGAAGTTAATGAACAGCATACCAATTTGTTTGAAACTTTAACGACCGagtatacaaatataaaaattatagctCAGGAGGATAAAGATAATGATGGTATCCATGAAAATGAGACAGAAGACAATGATAACATCGCAAAAGATAAAACTGCTTACTATGCTAGAGAAGCTATTAATAATActgagaattttataaataatttggtaATTGAGAATGATGAACAATCCTTTAATAACATAATAGCTAGTACTACCGCAGACGTAACAAGTGCAGCTGAAGAAGAATGTTCTGAAGATATTGTATTTGTGgaagatgaagaagaagaaaatgaaaataattctaatattttaattggCACTCATATATCTTCCGAAGAATTTGAGCTAATGGATGAGAATGAAAATGATGAGGAAATTGAAGAAGATGAACAAAATTCAGAGAATCATTAttcatataataataaaaatgagttTATAGAAGAACCTCAACAGAAAGAGAATGTTAGTACATTTAATACTCCTACGGAGGAAAATGAAGCTCTAACTCAGGATGCTGTAGAAAACGAAGAACTTGAACTTGTTTACTATGAAGAAGATTTACCAAGTGATAATGAAAATGAAGGCACAAGTAATGAAGCGGTATTGGAAGATCTGAAAACTATTAATAGGAAGTTGAATTCTTTGCAAACAGAAGATGAAAGTACTGTGGATTTAGATAATGAatcattaaattcaaataattctaGCGTAGCTAATATTAATAAAGATGTTATTGATGCAAAGAAAGCTGTAGATAATGATGAGGATGATCCTCAGGAGGATACCTACTCCTTGGAAGAAGAGTATTTAGTTGAAGaTATCATTTGTTCTCAAGAATATGACACTGTTGACCTAAATGAGTATTTGGATAAAGTTTTAgtaacaaaatttcaagatttacAATTGAATTGGGATATCGAATGTGAAtTGTGCCATGACAAATACAATAACTTACCGGAATTATTACAACACAACTGTGTAACAGAATTCGAGGAAGAACAACAATATCGATGTATTTTTAAGGATTGTGGAGAAGATATAAATAATTTGCAGACCTTAGCCAGACATTTAGTTTTACATCATTATGACAAATTGGAAAACACCATTATTTATAGCAAATGTCCAGATTGTCAGAAAacattttcgaattttattgaGTTGAATAAACATTCTTGCTGCcgtaatattaagaaaaaaactggtGCTCCCAATCATTGTCAGTCATGTAATTTGGATTTTCAATCTTTAAAAAGatttgtttttcatatgcaATTTCATTTGACGAATCATCGCCCAAAGGTTTGTCTATTGTGTGGTGCTTTATTCAATAATTCCAATGATTTCTTTGAACATACACAATACAAACATAATCCTGCCACAGCCATGGCATGCATAGAATGCGATagattctttaaagaaaaagaggTCTATGACAGCCATATGGAATTGCATGAGGAATCAAAATATCAATATGCCTGCAGCTATTGTCCTAAAAAGTATACCAACAAGGCAGGCCTCAATCAGCATGTAGATATTTATCACAATAACAAATCCTCTGCTATACAATgtgatttttgtgaaaaagaatttgttaatCAGGCCTCCTATCGTAATCATGTTAAATCTCATGCTGCTGATGTACAAATAGAAACTTATGTCTGTTCAACGTGTGGATTTATAACCAATGATTGTGATTTAATTAAGgAACATATAGAAGCAGATGCCGAATCCCCCTGCTTTTCTTCACCCCTGGAAGAGAAGCTATTAGCTTTAGGTTACACTTGTGAGAATTGTTCCATTGATTTTCATACCATTAAACAGCTTAAGGAACATCGTTTGAGTAACAAACATAAAGATACATTGTTTTTCTGTGGCATTTGTCGTCGAGCTTTTAACTCACTACGTCACATGCGTAATCATGCTATTAAtcataaagattttgaaaaatggcAGGAAGCTTTTCCAATAACACGTTATTTTGTGTGCAATATAGGTGATTGCCAAGAGTTTTATCCAATTTGGACTTCATTGTATTATCACAAAAAACGTCCGCATAAAAGTAAAGAAGTTAAAGATGATAAACCTTTGGAGTTTAAGTGTCAATTCTGTCAACAATTGTGCACCTCGAAAATGTCTTTGGCTGTGCATGTAGCTAGAAGTCATAATAATTCCAATATTTCTTGTTCTCACTGCAAACGTACGTACAAGACTCAAAAACTGTTGCAAGAACATATAGATAAATTCCATACAGCCATAAAATgtgaagtttgttttaaaaatttcaaaaatcggCGAAATTTAGAATCACATCGTAATTTGGTGCATCTTAATATGAAACGTTATTTCTGTCAATACTGTGAAAAAGGCTATTTTcataaaagtgaaaaagaagCGCATGAAAAGAAAGTGCATTCCGAATTTCCCTATAAATGTGAAATTTGTGATTTCATGACGAACTATGAAAAATCCTTGGAAGTTCATATGGATAAACATAATAATCAGCAAAAATTCAAATgtacaatttgtaataaaaccTTTGGTAGGAAACAACTTTTAACCATACATACAAAACGTCATGAAAATAAGAAAGAATACATTTGTTCAAATTACTTAAATGAAGATGGCTGTAGTGCAGCATTCTATACGTATAATCTTTTAAAGACACATATTCAAACGAAACATCAAAATGACAACAAACGTAaaagatctttaaaaaaatatgttgtacaAGTTGATGATAAatcttatgaaatatttaatgtcGATGAAGAGAGTACACAACAAGTTAAACGTTCAAAAACTGTAACATCTATAGAGAATAATGATAAATTCGAACAGGATGCTATTGAATTGGTATTGGAAGAAGATGATATAGAATCATTACATGAGCAGACAAGTGATGAATTCGAAACAATATGTGCTTAA
Protein Sequence: MAVNVSTAISVCLYCKTTSESDATKEFHEIFDEVGVELQLPTLVEKFFRIKAKNEDKQSLCEDCVNNLIELYDLEEHTKQEHGKAENSLGVNVQPEAEEEKNSEVACTEEVEKLNPEYLLKCTKQLVKEVNEQHTNLFETLTTEYTNIKIIAQEDKDNDGIHENETEDNDNIAKDKTAYYAREAINNTENFINNLVIENDEQSFNNIIASTTADVTSAAEEECSEDIVFVEDEEEENENNSNILIGTHISSEEFELMDENENDEEIEEDEQNSENHYSYNNKNEFIEEPQQKENVSTFNTPTEENEALTQDAVENEELELVYYEEDLPSDNENEGTSNEAVLEDLKTINRKLNSLQTEDESTVDLDNESLNSNNSSVANINKDVIDAKKAVDNDEDDPQEDTYSLEEEYLVEDIICSQEYDTVDLNEYLDKVLVTKFQDLQLNWDIECELCHDKYNNLPELLQHNCVTEFEEEQQYRCIFKDCGEDINNLQTLARHLVLHHYDKLENTIIYSKCPDCQKTFSNFIELNKHSCCRNIKKKTGAPNHCQSCNLDFQSLKRFVFHMQFHLTNHRPKVCLLCGALFNNSNDFFEHTQYKHNPATAMACIECDRFFKEKEVYDSHMELHEESKYQYACSYCPKKYTNKAGLNQHVDIYHNNKSSAIQCDFCEKEFVNQASYRNHVKSHAADVQIETYVCSTCGFITNDCDLIKEHIEADAESPCFSSPLEEKLLALGYTCENCSIDFHTIKQLKEHRLSNKHKDTLFFCGICRRAFNSLRHMRNHAINHKDFEKWQEAFPITRYFVCNIGDCQEFYPIWTSLYYHKKRPHKSKEVKDDKPLEFKCQFCQQLCTSKMSLAVHVARSHNNSNISCSHCKRTYKTQKLLQEHIDKFHTAIKCEVCFKNFKNRRNLESHRNLVHLNMKRYFCQYCEKGYFHKSEKEAHEKKVHSEFPYKCEICDFMTNYEKSLEVHMDKHNNQQKFKCTICNKTFGRKQLLTIHTKRHENKKEYICSNYLNEDGCSAAFYTYNLLKTHIQTKHQNDNKRKRSLKKYVVQVDDKSYEIFNVDEESTQQVKRSKTVTSIENNDKFEQDAIELVLEEDDIESLHEQTSDEFETICA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00922382;
90% Identity: -
80% Identity: -