Lser009272.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- -
- Assembly
- GCA_015586225.1
- Location
- NW:148793-155102[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.7e-06 8e-05 22.6 0.3 1 23 233 256 233 256 0.98 2 18 2.9 1.4e+02 3.0 1.0 1 20 262 281 262 283 0.93 3 18 0.00012 0.0057 16.7 0.3 2 23 317 338 317 338 0.98 4 18 2e-06 9.5e-05 22.3 6.8 1 23 344 366 344 366 0.99 5 18 1.1e-07 5.2e-06 26.3 1.2 1 23 372 394 372 394 0.98 6 18 0.00031 0.015 15.5 3.8 1 23 400 422 400 422 0.98 7 18 4e-06 0.00019 21.4 4.3 1 23 428 450 428 450 0.98 8 18 7.5e-05 0.0035 17.4 3.5 1 23 456 478 456 478 0.96 9 18 1.4 66 4.0 0.4 1 23 860 883 860 883 0.89 10 18 0.0081 0.38 11.0 3.5 1 23 893 916 893 917 0.97 11 18 0.26 12 6.2 0.5 2 20 923 941 922 943 0.92 12 18 0.00011 0.0052 16.9 2.2 2 23 956 978 955 978 0.96 13 18 1.5e-05 0.0007 19.6 1.9 1 23 987 1009 987 1009 0.98 14 18 0.00017 0.0077 16.3 2.0 1 23 1015 1037 1015 1037 0.94 15 18 8.9e-05 0.0041 17.2 1.6 1 23 1043 1065 1043 1065 0.96 16 18 0.00015 0.007 16.5 1.6 1 23 1071 1093 1071 1093 0.99 17 18 1.7e-05 0.00078 19.5 0.4 1 23 1099 1121 1099 1121 0.98 18 18 4.3e-06 0.0002 21.3 2.1 1 23 1127 1150 1127 1150 0.97
Sequence Information
- Coding Sequence
- atGGTAAATATAACTGAATTAACTTGTCGCGTTTGTTTGGAAGAACAAAATGTTCTCATAAATATCTACGATGAGTTGGAGGAATTACATACAAACCTAAGCAAACTTTTGGAAACATGTGCTGACCTGCAGATCAATGAAGGTGATATATTTCCCAAATATTTGTGTGAGAATTGTACGAGAGAACTTTTAATAACATCAAAATTTCGTGATAAATGTaataaatccaaagaaatactttatgaattatTAGAAAACTCGAGAATTATAGAAATTGAGGAAACCTCAACAAACTCAAATGATATAATAGAATACTGTGCAGAGGATTTGAATGATTTAGTAGAGGAAGATTTAATAATTGAAGAGGAATCCATAGAGAAAGAAACAGCAGAGCTGGAACCAATACAAGATATAGAAATAAATGAGCAGCAGGAAAGTACTTTATCTCTACTGAGGAAAAACATTGCAGAAACAACGAATGAAACAGAGATAAATCAACTGGAAACTAACATAGAAGAGACTATAACAGTAGAAAATAAAAGCGAAAATTTACCTTTAGTAGCCGAAGAAACTGGGAACGTTATTCCAGTTATTGTTTCATGGGATGATTCAACTGTAGTGGTGGCACAGGAAGATGAATCTATGCTTACAAGTACAACTAAAGCACtaagtgaaaaactaaaaagatCTCATATGTATAAATGTGATATATGCGGCGCCATATTTAAACAGGCCATCAATTTGCAAAAGCATTTACAAAAATCACACGATCCCATACATTTTTTTACATGCAGTAAATGTGAACATTGGTTCTCTTTAGAAACTGAGTTTAATAAACATGTTGAAAACTGTAATTATTtagatataaataatgaaattattgcggaaaataaaaaactgaaaacagaTAAAATCTCAGCGCCAGTATATGAACAGGATCCAAATCGTAAGTGTGTGTATTGTGAACGTGATTTTCCTACTCCATTCGCTTTGCGTATGCATTTAAGAACTCACACAGGAGAGCGGCCATTTCAGTGTAAATATTGCACAAAATCCTTTAAAACACAATCACAACTAAATGTTCATCATAAAAGGCACACTGGCCAGGCAGATTTTATTTGCACAATTTGCAATAAAACCTTTTATGAACAGAGTAACCTCACTGTTCATATGCGTTCACATACGGGTGAACGTCCTCATGTTTGTACAGTTTGCAATAAAACTTTTACTCGTGTTTTTCTCTTGCAATTTCATATGAGAACACATACTGGGGAAAAACCTTATAAATGTAGTTACTGTGATAAAAGTTTTCGCCAACATACCGATTTACGTAGTCACTTGACCATACATACGGGCCAGAAACAACACATTTGTGTTTTATGTGGTAAATCTTATATAAAACGTTCACATTTAGGGCAGCATATGCGCAAACATCAGCTACACCTAGCCACTGATGGTGTAGATAATGCGGAAGCAGCTTTGTTGGAAAACGAGCCTAGCACAGAGGAGCTAAATACTGCTACAgataatattcaaaattatgtACAAAATCCCGAAATTCTTTATAGTTTTGATGAGATTATAGAAAGTGAAGATGTTAGCTCACAAATGGAGGAATCCAGTacaaattataataaattaaataccatGGTGGACTTATGCCGTCTATGTGCTTCACTGCGTAAAATAGACGTTTTAGTCTCCATTAAAGATGAATCTAATGAAATCTGtgaaaaattacgaaaatgTTTTCAGCTTAATATTAAAATGCAGGATGCTCTACCTAAAACTATATGCCAGGAATGTAtgggaaatttaaataaattacataaattttatataaaagtaactGAGGCCCAAGAAACCTTGCAAGCATTATATCCAAATATCACGACACCGGAAGAATCAAATAAAAACTTGGAATCCGCACAGACATCCCTAGTAAAAACTTTATCTGCCATTAAGGAAAATCCCAGAAAGAGAAACTCTTCCCAGCAAAAGGAAGATAAAgtcaaatttataaaagaaacagatatacaagaaattgaaaaaacagaaattcctttaaaacaaatcaaactAGAAAAGTGTATAACAGTTAAAACAAACTATTCCATAAAGGAATCCAAGTCTAAAAATTCCCCCGAAAACTTACTACAAGAAGTGTACAATATGCTAGATATGACCAAAGAAGAAGCCATGATGGAGAGTTCCTATGAAATACTCGAAACTATAGAAGAAAATGCTGAAGACTTAACGGAGGATAGTAGTGACAAATATCTCGATTATGAAGAGACTTCTGAACAGCCGGAACCATTAATAGAAGAACATCATGTTTTGGAAGAtagtaatattattaaaaatcctATAGAGGTTATAGAAGATAAACAGTTGGACGCTGAACAGACAGAAGTTATTATATTACCGGATAAGGAATTAAATATTCAATTTGAATATGTGGATAATTATGAGGAGAATGAAGAGGAAGATGATGAATTATTAACCAATTCGGACAGAGAGCAATCTGAAAATAAAGGACAAGAAATAATGCAATTGAATTCGTGGAAATCCTATACTTACTTATGTTATCTTTGTGACAACAATTTCAACAATTTCTTGGATTTATACACACATCTAGCGGCCCAACATCAGCAAACAGAAATcgataaattatattataaatgttTTGATTGTCAAAAAGTAATACCACGTTATAATTACTTTCTCAATCATATACGTTCAAAACATCATCCGAGTTTAAAGTTAAAATGCGAAGTTTGTGACTTAAGTTGCCAGAACTATGAAGAACTCTCCTACCATCGTAGTGTTAATTGCCCAGATGCGAATAAATATGCTCATATAGTATCCTGTAATgaatgttttaaaagttttcataacCCATACGGTTTACAAAATCATTATAAAACACAACATACTAACATTAAACTTAAGTCAAAATATCAATGTCCGGAATGTGACAAAGAGTTTCAGTATAAAAGTTGTTTGAAAGTACACGAACAAGTTCATAATCATAAAAAGAAATTTGCCTGTAGTTATTGCGATCGTACATTTACCAATAAAAGTAGCTTGGAGTTTCATCTTTATTCCCATGTAAATGAAAAGACCTATAAATGTAATATATGTAATAAAAGTTTTAAAACATACCTTTCCCTTGATCAACATCAAGTACTACATCGAGAAGAGAAACCTTTCAAATGTGAATATTGTGAAAAGGATTTTCgcacaaaaattcaaaaaattgcCCATGAACGTACACACACCGGTGAAATGCCTTTTCCCTGCGGTCAGTGCACTAAACGTTTTCGTTTTCTCAGCGCTCTTAATGCTCATATTAAGATACATACGGGCGTTAAACCTTATTCATGTGAGTATTGTGATAAAACTTTTGCCGATAGTTCAAATCGTAATAAACACGTTAAACGAAAACATGCTAATAGTGAAAAGCAAGTGAATAAAAAAGACTAA
- Protein Sequence
- MVNITELTCRVCLEEQNVLINIYDELEELHTNLSKLLETCADLQINEGDIFPKYLCENCTRELLITSKFRDKCNKSKEILYELLENSRIIEIEETSTNSNDIIEYCAEDLNDLVEEDLIIEEESIEKETAELEPIQDIEINEQQESTLSLLRKNIAETTNETEINQLETNIEETITVENKSENLPLVAEETGNVIPVIVSWDDSTVVVAQEDESMLTSTTKALSEKLKRSHMYKCDICGAIFKQAINLQKHLQKSHDPIHFFTCSKCEHWFSLETEFNKHVENCNYLDINNEIIAENKKLKTDKISAPVYEQDPNRKCVYCERDFPTPFALRMHLRTHTGERPFQCKYCTKSFKTQSQLNVHHKRHTGQADFICTICNKTFYEQSNLTVHMRSHTGERPHVCTVCNKTFTRVFLLQFHMRTHTGEKPYKCSYCDKSFRQHTDLRSHLTIHTGQKQHICVLCGKSYIKRSHLGQHMRKHQLHLATDGVDNAEAALLENEPSTEELNTATDNIQNYVQNPEILYSFDEIIESEDVSSQMEESSTNYNKLNTMVDLCRLCASLRKIDVLVSIKDESNEICEKLRKCFQLNIKMQDALPKTICQECMGNLNKLHKFYIKVTEAQETLQALYPNITTPEESNKNLESAQTSLVKTLSAIKENPRKRNSSQQKEDKVKFIKETDIQEIEKTEIPLKQIKLEKCITVKTNYSIKESKSKNSPENLLQEVYNMLDMTKEEAMMESSYEILETIEENAEDLTEDSSDKYLDYEETSEQPEPLIEEHHVLEDSNIIKNPIEVIEDKQLDAEQTEVIILPDKELNIQFEYVDNYEENEEEDDELLTNSDREQSENKGQEIMQLNSWKSYTYLCYLCDNNFNNFLDLYTHLAAQHQQTEIDKLYYKCFDCQKVIPRYNYFLNHIRSKHHPSLKLKCEVCDLSCQNYEELSYHRSVNCPDANKYAHIVSCNECFKSFHNPYGLQNHYKTQHTNIKLKSKYQCPECDKEFQYKSCLKVHEQVHNHKKKFACSYCDRTFTNKSSLEFHLYSHVNEKTYKCNICNKSFKTYLSLDQHQVLHREEKPFKCEYCEKDFRTKIQKIAHERTHTGEMPFPCGQCTKRFRFLSALNAHIKIHTGVKPYSCEYCDKTFADSSNRNKHVKRKHANSEKQVNKKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00921543;
- 90% Identity
- -
- 80% Identity
- -