Basic Information

Insect: Lucilia cuprina
Gene Symbol: -
Assembly: GCA_001187945.1
Location: JRES01000091.1:520114-526498[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.2e-06 7.8e-05 22.6 0.3 1 23 236 259 236 259 0.98

2 18 2 1.3e+02 3.0 1.0 1 20 265 284 265 286 0.93

3 18 8.3e-05 0.0055 16.8 0.3 2 23 320 341 320 341 0.98

4 18 1.4e-06 9.1e-05 22.4 6.8 1 23 347 369 347 369 0.99

5 18 7.5e-08 5e-06 26.3 1.2 1 23 375 397 375 397 0.98

6 18 0.00021 0.014 15.5 3.8 1 23 403 425 403 425 0.98

7 18 2.6e-06 0.00017 21.5 4.5 1 23 431 453 431 453 0.98

8 18 0.00022 0.015 15.4 3.6 3 23 461 481 459 481 0.91

9 18 1.2 78 3.7 0.6 1 23 836 859 836 859 0.89

10 18 0.029 2 8.8 5.3 1 23 869 892 869 893 0.97

11 18 0.036 2.4 8.5 0.1 2 20 899 917 898 919 0.92

12 18 0.00033 0.022 14.9 0.8 2 23 932 954 931 954 0.96

13 18 4.5e-05 0.003 17.6 3.0 1 23 963 985 963 985 0.98

14 18 0.00023 0.015 15.4 1.9 1 23 991 1013 991 1013 0.94

15 18 2e-05 0.0013 18.7 1.8 1 23 1019 1041 1019 1041 0.97

16 18 0.00014 0.0095 16.0 1.7 1 23 1047 1069 1047 1069 0.99

17 18 2.9e-06 0.00019 21.4 0.3 1 23 1075 1097 1075 1097 0.98

18 18 1.4e-06 9.4e-05 22.3 2.2 1 23 1103 1126 1103 1126 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.2e-06	7.8e-05	22.6	0.3	1	23	236	259	236	259	0.98
2	18	2	1.3e+02	3.0	1.0	1	20	265	284	265	286	0.93
3	18	8.3e-05	0.0055	16.8	0.3	2	23	320	341	320	341	0.98
4	18	1.4e-06	9.1e-05	22.4	6.8	1	23	347	369	347	369	0.99
5	18	7.5e-08	5e-06	26.3	1.2	1	23	375	397	375	397	0.98
6	18	0.00021	0.014	15.5	3.8	1	23	403	425	403	425	0.98
7	18	2.6e-06	0.00017	21.5	4.5	1	23	431	453	431	453	0.98
8	18	0.00022	0.015	15.4	3.6	3	23	461	481	459	481	0.91
9	18	1.2	78	3.7	0.6	1	23	836	859	836	859	0.89
10	18	0.029	2	8.8	5.3	1	23	869	892	869	893	0.97
11	18	0.036	2.4	8.5	0.1	2	20	899	917	898	919	0.92
12	18	0.00033	0.022	14.9	0.8	2	23	932	954	931	954	0.96
13	18	4.5e-05	0.003	17.6	3.0	1	23	963	985	963	985	0.98
14	18	0.00023	0.015	15.4	1.9	1	23	991	1013	991	1013	0.94
15	18	2e-05	0.0013	18.7	1.8	1	23	1019	1041	1019	1041	0.97
16	18	0.00014	0.0095	16.0	1.7	1	23	1047	1069	1047	1069	0.99
17	18	2.9e-06	0.00019	21.4	0.3	1	23	1075	1097	1075	1097	0.98
18	18	1.4e-06	9.4e-05	22.3	2.2	1	23	1103	1126	1103	1126	0.98

Sequence Information

Coding Sequence: atgttaaatattactgAATTAACATGTCGTGTTTGTTTGGAAGAACAAAATGTTCTCATAAACATCTACGATGAGTTGGAAGAATTACATACAAACCTAAGCAAACTTTTGGAAACATGTGCTGATCTGCAGATTATTGAAAGTGATATATTTCCCAAATATTTGTGTGAGGATTGCACAAGAGAACTTTTAATAACATCAAAATTTCgtgaaaaatgtaataaatccaaagaaatacttTATGAATTATTAGAGAACTCAAGGATTATAGAAATAGAGGAGACCTCAACTAACTCCAATGATATAATAGAATATTGTGCAGatgatttaaatgatttaattgaAGAAGATTTAATAATTGAAGAGGAATCTGTAGACAAGGAAGCAGCTGAGATAGAAACAATACAAGATGCAGAAATAAACGAGCAGCAAGAAAGTACTTTATCTCTACTAAGGAAAAACGTTACAGAAAAAAAGAATGGAATTGAGATAAATCAGCAACAGGAAACTAACATAGAAGATACTCTAACATTAGACAATAATAGTGAAAGTTTACCTGTAATAGAAGAAGAAACCGATACCGGGGACGTAATTCCTATTATAGTTTCTTGGAATGATACCGCTGTAGCGGAGGCGCAGGAAGCAGAATCTATGCTAACAAGTTCAACTAaagtatttaatgaaaaactgaaaAGATCTCATATGTATAAATGTGATATATGTGGAGCCATATTTAAACAGGCAATTAACCTACaaaagcatttacaaaaatcacACGATCCCATACATTGTTTTACATGTAGTAAATGTGAACATTGGTTCTCTTTAGAAACAGAGTTTAATAAACATGTTGAAAACTGTAATTATTTAGATATAAATAACGATGTTATTGCGGAAAATAACAACCAAAAAACTGCTAAAACTCCAGCAACAGTATATGAACAAGATCCAAATCGTAAATGTGTGTATTGTGAACGTGATTTTCCTACTCCATTCGCTTTGCGTATGCATTTAAGAACTCACACAGGAGAGCGTCCATTTCAATGTAAATATTGCacaaaatcctttaaaacaCAATCACAACTAAATGTTCATCATAAAAGgCACACTGGCCAGGCAGACTTTATTTGCACAATTTGCAATAAAACCTTTTATGAACAGAGTAACCTTACGGTTCATATGCGTTCACATACCGGAGAACGTCCTCATGTTTGTACAGTTTGCAATAAAACTTTTACTCGTGTTTTTCTCTTGCAATTTCATATGAGAACACATACGGGGGAAAAACCTTATAAATGTACTTATTGTGATAAAAGTTTTCGCCAGCACACGGATTTACGTAGTCACTTGACCATACATACGGGCCAAAAACAAcacatttgtattttatgtgGTAAATCTTATATAAAACGTTCACATTTAGTGCAACATATGCGAAAACATCAGCTACACACAGCTGCCGATGGTGTAGAAACTGTGGAAgctgcattttatgaaaatgagCCTAGCACAGAGGAACTAAATACGGCTACtgataatcttcaaaattatgtacaaaatccggaaattctttataattttgatgAGATTATAGAAAGTGAAGATATTAGCTCACAAATGGAGGAATCCAACTTATGTCGTCTATGTGCTTCACTGCGTAAGATGGACTTTTTAGTCTCCATTACAGCtgaaatatgtgaaaaattacaaaaatgttgtcAGCTTAATATAAATAAGCAGGATGCTCTACCCAAAACTATATGCCAGGAATGTcttggaaatttaaataaatcacataagttttttataaaagtaacaGAGGCGCAAGAAACTTTGCAAGCATTGTATCCAAATAACTCGATACCAgaagaatctaataaggacttGGAATCTACACAGCcaactttattaaaaactttgtctGCCCATAAGGAAAAtcccataaaaagaaaacatgataaagtgataattataaatgaaaacgaTAAACAAGAACTTGAAAAGCCAgaaattcctttaaaacaaattaaacttgaAAAACTTCTAGCagttaaaacaaacaaagaacCCAAGTGTAAAAATTCCCCCGAAAACTTTCTACAAGAAGTGTACAATATGCTAGATATGACCAAAGAAGAAACTATCATGGAGAATTCCTATGAAATACTCGAAACTATAGAAGAAAATGCTGAAGACTTAACTGAGGATAGCAGTGACAAATATCTCAATTATGAAGAGACTTCTGAACAGCAGGAACCATTAATAGAAGAACATCATGTTTTAGAAGATAGTAATGTTAGTAAAAATCCTATAGAGGTTTTAGAAGATAAGCAGACAGACGTTATTATATTACCGGATAAAGAAATCAATATACAATTTGAATATGTGGATAATTATGAGGAGGATGAAGAGGAAGATGATCAATTATTATCCAATGTGGATAGAGATCAATCTAAAGGGTCAGGAAGGGAAATAATGcaaataaattcATGGAAATCCTATAATTACTTATGTTATCTTTGTGACAACAATTTCAACAACTTCTTGGATTTGTACACACATCTAGCTGATCAACATCAGCAAACGGAAAtcgataaattaaattataaatgttttgatTGTCAAAAAGTAATACCACATTACAATTACTTTCTCAATCACATACGTTCAAAACATCATCCgagcttaaaattaaaatgcgaAATCTGCGATTTAAGTTATCAGAACTATGAAGAACTCTCCTATCATCGTAGTGTTAATTGCCCAAATGCTAATAAATATGCTCACATAGTACCctgtaataaatgttttaaaagttttcaaagccTGTATGGTTTACAAAATCATTATAAAGTACAACATACGCACATTAAACCCAAGTCAAAATATCAATGTACGGAGTGTGATAAAGAGTTTCAgtataaaagttgtttaaaagtaCACGAACAAGTTCATAATCGTAATAAGAAATTTGCCTGTAGTTATTGTGATCGtacatttaacaataaaagtagTTTGGAGTTTCATCTTTATTCTCATGTAGATGAAAAGACCTATAAAtgtaatatatgtaaaaaaagtTTTAAAACATACCAATCCCTCGATCAACATCTAGCATTGCATCGTGAAGAGAAACCATTCAAATGTGAATTTTGTGATAAAGATTTTCgcacaaaaatccaaaaaattgcCCATGAACGTACACATACCGGCGAAATGCCTTTTCCCTGTGGGCAGTGTGATAAACGTTTTCGTTTTCTTAGCGCTCTTAATGCACACATTAAGATACATACGGGCGTTAAACCTTATTCATGTGAGTATTGTGATAAAACATTTGTCGATAGTTCAAATCGTAATAAACACGTTAGACGAAAACATGCTAATGGTGAAAAACAAacattttaa
Protein Sequence: MLNITELTCRVCLEEQNVLINIYDELEELHTNLSKLLETCADLQIIESDIFPKYLCEDCTRELLITSKFREKCNKSKEILYELLENSRIIEIEETSTNSNDIIEYCADDLNDLIEEDLIIEEESVDKEAAEIETIQDAEINEQQESTLSLLRKNVTEKKNGIEINQQQETNIEDTLTLDNNSESLPVIEEETDTGDVIPIIVSWNDTAVAEAQEAESMLTSSTKVFNEKLKRSHMYKCDICGAIFKQAINLQKHLQKSHDPIHCFTCSKCEHWFSLETEFNKHVENCNYLDINNDVIAENNNQKTAKTPATVYEQDPNRKCVYCERDFPTPFALRMHLRTHTGERPFQCKYCTKSFKTQSQLNVHHKRHTGQADFICTICNKTFYEQSNLTVHMRSHTGERPHVCTVCNKTFTRVFLLQFHMRTHTGEKPYKCTYCDKSFRQHTDLRSHLTIHTGQKQHICILCGKSYIKRSHLVQHMRKHQLHTAADGVETVEAAFYENEPSTEELNTATDNLQNYVQNPEILYNFDEIIESEDISSQMEESNLCRLCASLRKMDFLVSITAEICEKLQKCCQLNINKQDALPKTICQECLGNLNKSHKFFIKVTEAQETLQALYPNNSIPEESNKDLESTQPTLLKTLSAHKENPIKRKHDKVIIINENDKQELEKPEIPLKQIKLEKLLAVKTNKEPKCKNSPENFLQEVYNMLDMTKEETIMENSYEILETIEENAEDLTEDSSDKYLNYEETSEQQEPLIEEHHVLEDSNVSKNPIEVLEDKQTDVIILPDKEINIQFEYVDNYEEDEEEDDQLLSNVDRDQSKGSGREIMQINSWKSYNYLCYLCDNNFNNFLDLYTHLADQHQQTEIDKLNYKCFDCQKVIPHYNYFLNHIRSKHHPSLKLKCEICDLSYQNYEELSYHRSVNCPNANKYAHIVPCNKCFKSFQSLYGLQNHYKVQHTHIKPKSKYQCTECDKEFQYKSCLKVHEQVHNRNKKFACSYCDRTFNNKSSLEFHLYSHVDEKTYKCNICKKSFKTYQSLDQHLALHREEKPFKCEFCDKDFRTKIQKIAHERTHTGEMPFPCGQCDKRFRFLSALNAHIKIHTGVKPYSCEYCDKTFVDSSNRNKHVRRKHANGEKQTF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00922266;
90% Identity: -
80% Identity: -