Lser011984.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lucilia sericata
Gene Symbol
-
Assembly
GCA_015586225.1
Location
NW:541444-554454[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 7.2 3.3e+02 1.7 0.6 5 17 12 24 11 25 0.92
2 32 0.0032 0.15 12.3 1.2 1 23 210 232 210 232 0.97
3 32 0.00036 0.017 15.3 3.7 3 23 233 254 231 254 0.96
4 32 0.35 16 5.9 4.6 1 23 268 291 268 291 0.91
5 32 0.0011 0.051 13.7 1.4 1 23 298 321 298 321 0.92
6 32 0.0002 0.0094 16.1 3.0 2 23 400 422 399 422 0.95
7 32 1.2e-05 0.00056 19.9 5.2 1 23 429 452 429 452 0.97
8 32 2.8 1.3e+02 3.0 3.2 1 13 472 484 472 487 0.89
9 32 7.4e-05 0.0035 17.4 0.4 2 23 741 763 740 763 0.95
10 32 7.8e-05 0.0036 17.4 7.0 2 23 771 793 770 793 0.96
11 32 0.00031 0.014 15.5 4.1 1 23 811 834 811 834 0.96
12 32 5.8e-05 0.0027 17.8 1.2 3 23 875 895 874 895 0.99
13 32 0.001 0.047 13.9 0.7 1 23 901 923 901 923 0.98
14 32 1.2e-06 5.4e-05 23.1 1.4 1 23 929 951 929 951 0.99
15 32 4.3e-05 0.002 18.2 2.7 1 23 957 979 957 979 0.99
16 32 7.3e-05 0.0034 17.4 0.9 1 22 985 1006 985 1009 0.91
17 32 1.7e-06 7.9e-05 22.6 1.7 3 23 1268 1289 1267 1289 0.98
18 32 0.0066 0.31 11.3 6.7 2 23 1297 1319 1296 1319 0.96
19 32 0.00018 0.0082 16.2 2.1 1 23 1337 1360 1337 1360 0.98
20 32 2.2e-05 0.001 19.1 1.6 3 23 1383 1403 1382 1403 0.99
21 32 0.00011 0.0052 16.9 0.3 1 23 1409 1431 1409 1431 0.99
22 32 5.5e-07 2.6e-05 24.1 1.9 1 23 1437 1459 1437 1459 0.98
23 32 4.6e-05 0.0022 18.1 2.6 1 23 1465 1487 1465 1487 0.99
24 32 0.00012 0.0057 16.7 0.7 1 22 1493 1514 1493 1517 0.90
25 32 9.1e-06 0.00042 20.3 0.6 2 23 1981 2003 1980 2003 0.96
26 32 0.0071 0.33 11.2 8.0 2 23 2011 2033 2010 2033 0.96
27 32 0.00032 0.015 15.4 4.4 1 23 2051 2074 2051 2074 0.97
28 32 1.2e-05 0.00055 19.9 1.9 3 23 2115 2135 2114 2135 0.99
29 32 0.0046 0.22 11.8 1.4 1 23 2141 2163 2141 2163 0.98
30 32 1.1e-06 5.3e-05 23.1 1.6 1 23 2169 2191 2169 2191 0.97
31 32 0.00011 0.0051 16.9 2.7 1 23 2197 2219 2197 2219 0.99
32 32 0.0011 0.05 13.8 1.8 1 21 2225 2245 2225 2249 0.90

Sequence Information

Coding Sequence
ATGACTACTCAAGATCCATTAGAAAGTCAACAACATTGTCGTACTTGTTATAATTCAAAAAGTAATTTACAATTACTAAAATCTCTGCCAGAATCCTGGACAAGCCGAAATGAACCTAAAACCTATGCCGAATTATTAACAGAAGTTTGTCAAATAGAtTTTATGGAAGCAGTTTCTCCCTTAGACCTTTGGCCGCAATATATTTGCTTAACGTGTTGTGAAAAACTTAAATCTGCTTATGATTTTATACAACAAACGCAtacaattaataaatatttaaaaacacttGCTGGTCAATTACAAACTAAACAGAATCACTTTATAGAAATACCTGAATTGAATATTCCtttggaaattaaaatggaaacaGACAATGATGTGGAGATAGCAGTAAATGTAGCGGTATTACAGAATAATCCCTTGGAAAGGAAAGAAGAAACTGTTGAAACCGAAACTGTAGCAATTAAAGACAGTCTCTTGGAAAGGGTAGAAGCTGTTAAGTGCGAAACAGTTGCCTTCACAGACAAAGACTGTGAAGATAGtaCAAACAATAGAAATGAGAACTTTAGAGATAAGAATGAAAATAATACAACACCAGGCctagaaattaataataataacatcGAATTCCAATGCgataaatgcaaaataatatttCCAAATGCCTTAAAATTAAAACGCCATAAATACAAACATTGTCCTCATTgcgatttattttttaaaaaatcctcTAGTTTAAAATACCACATATCGACTAGGCATACAGCCGAGAataatgcaaatattttaaaagaaaaaaaatttatctgcaaaaaatgtttgtataagttTAAAACTTCTGGACAATTAGGTCATCACAATTATCGTTTTCACATGCCATCAGAATGTATATTTCTTTGTTCGCAATGTGGTCACACGTTTGAAGAATCCGACGAATTTAAAAAGCATATGCTAGACGAACATAATAAAAATGTGCTGGTACGGAATATATTTAAACTGTCCTGTAATAAATGTGATTTTAAGGCCTTAGGTCGATATCATTTAAATAAGCATAATCATAAAATGCATAAAGAtcaataTCCTTATAAAAGTTCTTTGCCAGAATGGCACTTAAAAACTGTACACACTCCtagtaaaaaagttgaaatagctAAAAAAGATAAACCCAAAATAGTGAATGACATCAATACAGCTGTGCCCTGTAATGAATGCgggaaaatatttcataatttacgGAAATTGACACGACACCAGCGTCATGCTCATGTGCCGGACGAAAAGAAGTTCGTTTGTCATATGTGTGGACAAAAATTTGGACGATCTGATCATTTTCGTAGACATATGCGTAATTTACATCAAACGGATGTAAGTGTTTTAGAGCCAAAGCGTCAAATACGCCTGAAGGATAATCGCTTCGCATGCGATAAATGTGATCGCAGCTATACGAGACGTTGTCaaaaattagaaaaagaaCAATGTCGAGCGTGTTATAATTCCACCAAAGGTTTAAGATACCTAACAAGTCTAACCAAATGTTCGGGCGAGGATCAACAGCAAAAATCCTATGCTGAACTACTAAAGGAAGTGGCCAATATAAATaTAAGGGAGGATTTTTATAAAGAGCAAATGCCCCATTCAATATGTGAAATTTGTGTACGCAGACTAAAAGCTGCATATACTTTTATACAACAAACCCAGGAAGTTAATGAACGTTTGCTAGCCATTGCCGAGCAATTGGAAACTGATAAACAGCTTAAGTGTTTACAAGAGCCACCGGTAGATATAGTTGTTACGGATACTATTAAAGCAGAAAAAGAAGAGGAAATGGACTATTTGGGACAGATCGAACCGGAATGTTTTGTAGAATTAAAGGTAGAGGAACCGGAGCATAAAATGGCCATAGATAACTGCAGTGAAGATGTTTTAAGTTTGAAAAAGGACaaggaaactttaaaagaagaCCTTAGTTTAACTTTAAGGGAAGATAAACGTCCTCTTTCGGCAGAATCTgataatgaaaatgttaaaacaagAGACCAGGTTGATACCAAAAATGATTCTAAAGACAGTAGTGAGTTTTCTAATGATGATAAAAGTGTCAACAACTCAGATTCAGATTGGAAAGATGACAAAGTTGCTGTTGAGAATACaaaagttaaaaagaaaacccgcacaaaatgcaaaaaatccTCCTATAATCCCGATGATGATATTGCTGTACCCTGTGAAGAATGCAATAAGATATTTAACAATTCCAAAGCTTTGGCCCGACACAAACGCAATACACACATACCGGAAGAACAAAAATGTACCTGTCCACTGTGTGGCCGTAGATTTTCACGTTCTTGTAATATGTATAAACACATGCGTACATTTCATGGTCCCGATTCAGTTCCTCTAATACGTAAACCTTCCACTAAAGAACGACAGTTTCAGTGTGATAAATGTGAacgaaattatactaaaaagaGTCATTTGAACttacatataaaagaaaaacacagcAATAATGAAGAGGGGACAGAAAAGCAAACATCGACTAGTGAGGAAACTGCGCAGGCTACTGGAGAAGATTCTGTTAAAAAGGATAAACCTAAAAAGAGATATGAAGTACGTTCCTTATGTTCCATATGCGGTTCTTCATTTGCCAGTCGTACTCATTTGGTAGTACATATGCGCCGTCACACAGGAGAGCGTCCCTTTAAATGTGATCTCTGTGATCGCGCCTATCCGCGTCCCTCGGAACTCGTGTGTCATCGACGTATACATACCGGCGAAAAACCGTTTAAATGTAAGATTTGTGATAAAGCTTTTCGTGTCTGGAGTAAAATGAGCAATCATATGCGTTCCCATACGGATATAAGACCCTATAAGTGTACACAGTGTGAGCgaagttttaaatattccaaagaTTTAAATATTCACTTTCGTATACATACGGGAGAGCGTCCCTATAAGTGCAATGTTTGCGGCAGTACATTTACTCAAAGTAATACATTAAAAGCTCATCGTTCAAAATTGGGCCATATGGATGAGGTGGTCGTCAATAAGGAGCCAGTAGTTTGCATTCTCAACATTCGCTcccaaacaacaaaatataataaaaagaaaaaaatgaatacCACTGAACAATTAGAAAAGCAACAATGTCGTACATGTTACAATGCCACCAAAGGCTTAAAACCTCTGACAGATCTGACCAAATGTGGTGGTGGCAGTCAACAGATATCCTATGCTGAACTGCTGGCTgatatttccaatataaatATAATGGACGATTTTTACAATGAATTGCCACAATTCATATGCGAGACCTGTCAACGGAAATTGAAAGCAGCCCAGGCATTTATACAGCAAACCCATGAGGTGAATGAACGTTTAATAGCAATGCTGAGTAATCAAAAGGATACATCCGCTGTAGAATTCACATGTTTGGAGGAGGCTCCGGTGCAAGTTAAAATGGAATTTGAGGACAGCTTGCCAGAAGTAGAACCTGAACCACAATGGCATGATGAACTGAAAGATGATGGTGACGAAATTCCTGCTGGTTTAGTGAGCGGTGTGAGAGAGGGCAATGATAGCGGGGACTTtgttaaaaaagaAGATGATAAatctataaataatttaaaaacaaacaaagattCACTAAATCAAGAAAGCGAAAGCAACAATGAAAACGAAAAAGATTGTGAAGAAAAGCAATCAGATAATATTGAAACACAAGAGgaggaaataaagaaaaataatgaagaaaaccCTCTTGAAACAACCACAAGTGATGAGGATGATGTGGCTGTTGCCTGTAAAAAATGTGATAAAGTATTTAATAATTCCAAAGCCTTAACAAGGCATTTACGCACCACCCACATACCAGATGATCAAAAATGTTCGTGTCCAAtatgttttagaaaattcacAAGAGCCTGCAGTATGTATACACATATGCGTACATTTCATGGTTCCAATACTGTGCCCTTCGTACGAAAACCCTTAACCCAGGATAGGATGTTTCAGTGTGAAAAATGTCccaaaaattatacacaaaagaAATATCTTGATGTTCATGTCAAAACTAAACACACACAAGATAATGAGCAGAAGGAGGAAAACAAGGAAATACTGCCAAAAATATACCATAAACCTTTGTGTTCCATTTGCGGCAGTTCATTTCCCAATAAAACTCATCTAATGGTACACATGCGTCGTCATACGGGTGAGCGTCCATTTAAATGTGATCTCTGTGAACGTGCCTTTCCCCGTCTGGTAGAGTTGACTTATCATCGACGCATTCATACGGGTGAAAAACCATTTGAGTGTAAAATTTGTGGTAAAACTTTTCGTGTTTCCAGCAAAATGACCACACATATGCGTTCACATACGGATATACGACCCTATAAATGTTCACAATGTGAACGcagttttaaatattccaaagaTTTAAATATACACTTTCGTATACACACTGGTGAGCGCCCTTATAGTTGCAATGTTTGCGGCAACACTTTCACCCAGAGTAATAGCCTTAAAACTCATCGTGCCAAATTGGGTCACATGGAAAaaaacaatgaaattttgaagCATCAAATGAGAGATATCAAAAATCAAAATACTTTAGTGCTAAATGTTTTAAGCGAAAATACTGATGCTATAGAAAagtcattaaataaaaatcctagatttttaaaaatatttccgaTAAGTACTATAGAACAATTAAATGAAATAGAAGAGAATATTAATGAACAAAATGAAAAGGATTATATTTCTTCCATAAGAGCAATAGCTGGTCAACGTGGCCTAAAAAAAGGTCTATCCGATATAATGACGCCCAAACTTTTGGTAGAATTTAATGTTGATGGCAGTCATAATAAACAGCGTCTTTTAAATTACACcaaatttgttaatgttttgtttcATGGTACTTATGATGAAAATTGTACTGAAAAGTCGTTTAAATGTCATTTAAGAGATgctttaaaattagttaaaaatcgttattttaaagaaaaatgtgtaTCTAAGGATAAGAATGATAATGTAGCCAAGGAAATTGCAGCTTCTAAATTGCAAAAcGAACAAAATAACATGGAAAAATTGGAAAAGCAACAGTGTCGTGCATGTTACAATGCCAATAAAGGTCTTAAGCTCCTAACCAAATGTATTGGCGGTCTGCAAAAGAAATCCTATGCAGAACTCTTAAGGGAGGTGTCCAATataaatATAATGGATGAAGCTTACAAAGAATTGCCACAATTTATATGCGACAGCTGTTCACGCAAACTAAAAGCCTCACATGCATTCATACAACAAACCCATGAAGTCAATGAACGTTTAATGACCATGTTAATGGGACGAGATGAGACAAATAATCAATTGGATTGTCTGCAGGAGGCTCAGGTGGATATACAGTCTTGTTTGGAAATAAAAATGGAACATGATGAGGCTGGGGCTGAGGCGAAAACTGAAGAACCTTGTTCTGTTGAACTAAAGCTCGAGGAGCCGGAAGATTTTACGCAAATTAATCACTTAAATGTTCAGGAATTGTGTGAAAAAAAGGATGGTGATGAGGAAAATGATACGGTGGAAATAGTaactttaaaagaaacaaatgaaGCAAAAACTAACTTAAATGGTCCTGAACATCAAGTTAATGAGGATATATTGAATGTGGATACAACAAAGGAGGATGATATAACCCTTTTAAATACAAAACCTATAACGGATTTATTCCTAGATGACGAAGAGGATGACGATGATGGCGCCGGCGATAAAGATAGCGATACTGATGATGAGGATTATCAAGACGACCCAACAGATGATATGGACTGGCAAAAAGAGCAAAAATCCAACAGCTCAAATAGTAAAAAAGatgataaaaagaaaattacgaAAAAATCGAGAAAATCTGAAGAAACCACCGAAGATGATGATGTGGCCGTGCCCTGTAGTCAgtgcaataaaatatttaataattccaAAGCTCTAGCTCGACATCAACGCACTAGTCACATACCTGAAGATCAAAAATGTACTTGTCCATTGTGTTTTCGTAAATTTTCCCGCTCCTGCAATATGTATACACACATGCGTACCTTTCATGGTCCCGATACAGTGCCGCTCATACGTAAACCCTCAACACAAGAAAGAATCTTTCAGTGTGACAAATGTCCTAGGaattatacaaaaaagaaacatcttaatatacacataaaaaataaacacagtcaAGAGAATGAGATTAAAGAAACTAATGCAGAAAATTCTACAGAAGAGCTAAAGGAAACTAGTGAAGAATCACCTGTCAAACCCAATAAACCGAAAAGATACGAAGTACGCTCTTTGTGCTCCATTTGTGGCAGCTCATTTTCCAGTAAAACTCATCTCATAGTGCATATGCGACGACATACGGGCGAACGACCTTTTAAATGTGATCTCTGCGATCGTGCCTATCCTCGCATCTCCGAATTAACCTGCCATCGACGCATACATACGGGTGAAAAACCTTTTGCCTGTAAAATATGCGGTAAAACTTTTCGTGTTTCCAGTAAAATGACCACCCACATGCGTTCACATACCGATATACGACCCTATAAATGTACACAATGTGAACGTAGCTTTAAATACTCCAAAGATTTAAGTATACATTTTCGTATACATACGGGCGAAAGGCCGTATTGTTGTAATGTTTGTGGCAGCACATTTACGCAAAGTAATACTCTAAAAGCTCATCGTGTTAAGTTAGGTCATATGGATAATGTTGTGGAAAACAGTGCAACTAATTTAGTTTAG
Protein Sequence
MTTQDPLESQQHCRTCYNSKSNLQLLKSLPESWTSRNEPKTYAELLTEVCQIDFMEAVSPLDLWPQYICLTCCEKLKSAYDFIQQTHTINKYLKTLAGQLQTKQNHFIEIPELNIPLEIKMETDNDVEIAVNVAVLQNNPLERKEETVETETVAIKDSLLERVEAVKCETVAFTDKDCEDSTNNRNENFRDKNENNTTPGLEINNNNIEFQCDKCKIIFPNALKLKRHKYKHCPHCDLFFKKSSSLKYHISTRHTAENNANILKEKKFICKKCLYKFKTSGQLGHHNYRFHMPSECIFLCSQCGHTFEESDEFKKHMLDEHNKNVLVRNIFKLSCNKCDFKALGRYHLNKHNHKMHKDQYPYKSSLPEWHLKTVHTPSKKVEIAKKDKPKIVNDINTAVPCNECGKIFHNLRKLTRHQRHAHVPDEKKFVCHMCGQKFGRSDHFRRHMRNLHQTDVSVLEPKRQIRLKDNRFACDKCDRSYTRRCQKLEKEQCRACYNSTKGLRYLTSLTKCSGEDQQQKSYAELLKEVANINIREDFYKEQMPHSICEICVRRLKAAYTFIQQTQEVNERLLAIAEQLETDKQLKCLQEPPVDIVVTDTIKAEKEEEMDYLGQIEPECFVELKVEEPEHKMAIDNCSEDVLSLKKDKETLKEDLSLTLREDKRPLSAESDNENVKTRDQVDTKNDSKDSSEFSNDDKSVNNSDSDWKDDKVAVENTKVKKKTRTKCKKSSYNPDDDIAVPCEECNKIFNNSKALARHKRNTHIPEEQKCTCPLCGRRFSRSCNMYKHMRTFHGPDSVPLIRKPSTKERQFQCDKCERNYTKKSHLNLHIKEKHSNNEEGTEKQTSTSEETAQATGEDSVKKDKPKKRYEVRSLCSICGSSFASRTHLVVHMRRHTGERPFKCDLCDRAYPRPSELVCHRRIHTGEKPFKCKICDKAFRVWSKMSNHMRSHTDIRPYKCTQCERSFKYSKDLNIHFRIHTGERPYKCNVCGSTFTQSNTLKAHRSKLGHMDEVVVNKEPVVCILNIRSQTTKYNKKKKMNTTEQLEKQQCRTCYNATKGLKPLTDLTKCGGGSQQISYAELLADISNINIMDDFYNELPQFICETCQRKLKAAQAFIQQTHEVNERLIAMLSNQKDTSAVEFTCLEEAPVQVKMEFEDSLPEVEPEPQWHDELKDDGDEIPAGLVSGVREGNDSGDFVKKEDDKSINNLKTNKDSLNQESESNNENEKDCEEKQSDNIETQEEEIKKNNEENPLETTTSDEDDVAVACKKCDKVFNNSKALTRHLRTTHIPDDQKCSCPICFRKFTRACSMYTHMRTFHGSNTVPFVRKPLTQDRMFQCEKCPKNYTQKKYLDVHVKTKHTQDNEQKEENKEILPKIYHKPLCSICGSSFPNKTHLMVHMRRHTGERPFKCDLCERAFPRLVELTYHRRIHTGEKPFECKICGKTFRVSSKMTTHMRSHTDIRPYKCSQCERSFKYSKDLNIHFRIHTGERPYSCNVCGNTFTQSNSLKTHRAKLGHMEKNNEILKHQMRDIKNQNTLVLNVLSENTDAIEKSLNKNPRFLKIFPISTIEQLNEIEENINEQNEKDYISSIRAIAGQRGLKKGLSDIMTPKLLVEFNVDGSHNKQRLLNYTKFVNVLFHGTYDENCTEKSFKCHLRDALKLVKNRYFKEKCVSKDKNDNVAKEIAASKLQNEQNNMEKLEKQQCRACYNANKGLKLLTKCIGGLQKKSYAELLREVSNINIMDEAYKELPQFICDSCSRKLKASHAFIQQTHEVNERLMTMLMGRDETNNQLDCLQEAQVDIQSCLEIKMEHDEAGAEAKTEEPCSVELKLEEPEDFTQINHLNVQELCEKKDGDEENDTVEIVTLKETNEAKTNLNGPEHQVNEDILNVDTTKEDDITLLNTKPITDLFLDDEEDDDDGAGDKDSDTDDEDYQDDPTDDMDWQKEQKSNSSNSKKDDKKKITKKSRKSEETTEDDDVAVPCSQCNKIFNNSKALARHQRTSHIPEDQKCTCPLCFRKFSRSCNMYTHMRTFHGPDTVPLIRKPSTQERIFQCDKCPRNYTKKKHLNIHIKNKHSQENEIKETNAENSTEELKETSEESPVKPNKPKRYEVRSLCSICGSSFSSKTHLIVHMRRHTGERPFKCDLCDRAYPRISELTCHRRIHTGEKPFACKICGKTFRVSSKMTTHMRSHTDIRPYKCTQCERSFKYSKDLSIHFRIHTGERPYCCNVCGSTFTQSNTLKAHRVKLGHMDNVVENSATNLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00921536;
90% Identity
-
80% Identity
-