Lcup009838.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lucilia cuprina
Gene Symbol
-
Assembly
GCA_001187945.1
Location
JRES01001097.1:175133-190781[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 0.12 7.7 6.9 0.3 1 23 202 225 202 225 0.92
2 32 0.00027 0.018 15.2 3.6 3 23 226 247 225 247 0.97
3 32 0.13 8.6 6.7 4.2 1 23 261 284 261 284 0.92
4 32 0.00026 0.018 15.2 0.5 1 23 291 314 291 314 0.92
5 32 0.018 1.2 9.4 4.8 2 23 355 377 354 377 0.94
6 32 7.2e-05 0.0048 17.0 4.2 2 23 385 407 384 407 0.95
7 32 0.0028 0.19 11.9 5.5 3 23 434 455 432 455 0.95
8 32 8.1e-06 0.00054 19.9 5.2 1 23 462 485 462 485 0.97
9 32 5e-05 0.0033 17.5 0.4 2 23 739 761 738 761 0.95
10 32 5.2e-05 0.0035 17.4 7.0 2 23 769 791 768 791 0.96
11 32 0.00021 0.014 15.5 4.1 1 23 809 832 809 832 0.96
12 32 3.9e-05 0.0026 17.8 1.2 3 23 873 893 872 893 0.99
13 32 0.00068 0.045 13.9 0.7 1 23 899 921 899 921 0.98
14 32 7.8e-07 5.2e-05 23.1 1.4 1 23 927 949 927 949 0.99
15 32 2.9e-05 0.002 18.2 2.7 1 23 955 977 955 977 0.99
16 32 0.16 10 6.5 0.6 1 13 983 995 983 1000 0.85
17 32 2.1e-06 0.00014 21.8 1.1 3 23 1192 1213 1191 1213 0.97
18 32 0.064 4.3 7.7 6.3 2 23 1221 1243 1220 1243 0.96
19 32 0.00012 0.0079 16.3 2.1 1 23 1261 1284 1261 1284 0.98
20 32 1.5e-05 0.00097 19.1 1.6 3 23 1307 1327 1306 1327 0.99
21 32 7.5e-05 0.005 16.9 0.3 1 23 1333 1355 1333 1355 0.99
22 32 3.7e-07 2.5e-05 24.2 1.9 1 23 1361 1383 1361 1383 0.98
23 32 2.9e-05 0.002 18.2 2.7 1 23 1389 1411 1389 1411 0.99
24 32 6.4e-05 0.0043 17.1 2.5 1 22 1417 1438 1417 1441 0.91
25 32 4.1e-06 0.00028 20.9 0.6 2 23 1925 1947 1924 1947 0.96
26 32 0.0048 0.32 11.2 8.0 2 23 1955 1977 1954 1977 0.96
27 32 0.00022 0.014 15.5 4.4 1 23 1995 2018 1995 2018 0.97
28 32 8e-06 0.00053 20.0 1.9 3 23 2059 2079 2058 2079 0.99
29 32 0.011 0.72 10.1 1.4 1 23 2085 2107 2085 2107 0.98
30 32 7.6e-07 5.1e-05 23.2 1.6 1 23 2113 2135 2113 2135 0.97
31 32 7.3e-05 0.0049 16.9 2.7 1 23 2141 2163 2141 2163 0.99
32 32 0.00073 0.049 13.8 1.8 1 21 2169 2189 2169 2193 0.90

Sequence Information

Coding Sequence
ATGATTACCCAAGATCCACTAGAAGAATATCAACAACATTGTCGTACTTgttataattcaaaaaataatttacaattactAAAATCACTCCCAGAATCCTGGACAAACCAAAATGAACCAAAAACATATGCCGAATTATTAACAGAAGTTTGTCAAATAGATTTAACGGAAGCAGTTACTCAATCAGACCTTTGGCCACAATTTATTTGCTTAACGTGCTGTGAAAAACTTAAATCTGCCTATGATTTTATACAACAAACACATaagattaataaatatttaaaaacactttccGGTCagttacaaacaaaaactgaGCACTTCATAGAAATACCCGAATTGGATATTCCTTTGgatattaaaatggaaaaagacAATGATGTGGAGTTAGCTGTAAATGTGGGGGTATTTCAGTATAATTCATTGGAAAGGAAAGAAGATGCTGTAAAAACCGATATTGCATCATCTGTAGATAGTCTCTTGGAAAAGGTAGAAGCTATTAAGTCCGATAAAGTTGATACCGTAGACAATGACTTTGATGATCGAGTTAAGAATGAAAGTAAGACAACACAAAGCCTagaagttaataataataacatcgAATTTCAATGtgataaatgcaaaataatattaCCAAATGCTTTGAAGTTAAAACGTCATGTATACCAACGACATTGTCCTCATTgtgatatgttttttaaaaaatcctcTAAATTAAAATACCACATACTGACTAGACATACAGCAAAGAATAATGCGAATATtataatagaaaagaaatttagctgtaaaaaatgtttgagtaaatttaaaacttctcaGCAATTACGTAATCACAATTATCGTATGCACATGCCATCAGAATGTATATTTCTGTGTTCGCAATGTGGTCAAACGTTTGAAGAGTCCGACGAATTCAAGAAGCATATGCTAGACGAACATGATGAAAATGTGATGGTACAGCAAAGTTTTAAACTGTCCtgtaataaatTACAAAGTATGGATTACATAAACAAGAACCTCTTAAAATCTCCTACAAATGAATCCACCCACCAAACGTTAACCTGCTCTGAAtgtcataaaatatttgctaccgTACAGAAATTAAATCACCATAAACGTTTCAATCATGTTCCCGAGGATAAAAAGCTCCCTTGTCATATTTGTAATATGAAATTCTCACGAACCTATCACTTAAAAAGACACCTACAAAATGTACATGCTCCTAGTACTAAAGgcgaaattgttaaaaaagatcAAAATCCTAAAACAATAATGGACATCAATACAGCTATGCACTGTAATCAGTgtgggaaaatattttataattcacAAAAATTCTCGCGACATCAACGTCATGCTCATGTACCGGACGAGAAGAAGTTCGTTTGTCATATGTGTGGACAAAAATTTGGACGATCTGATCATTTTCGTAGGCATATGCGTAATTTACATCAAACGGATGTAAaaaaattaaataaagaacaaTGTCGAGCGTGTTATAATTCCACCAAAGGTTTACGGCTACTAACAAATCTAACAAAATGTTCGGGCGAGGATCAACAGCAAAAATCCTATGCCGAACTATTAAAGGAAGTGGCCAATATAAATaTAATGGAGGATTTGTATAGAGAGCAAATGCCGCATTCAATATGTGAAATTTGTATACGCAGACTAAAAACTGCCCATACTTTTATACAACAAACCCAGGAAGTTAATGAACGTTTGCTAGCCATTGCCGAGCAATTGGAAACGGATAAACAGCTTAAGTGTTTGCAAGAGCCACCGGTAGATATAGTAGTTACGGATAATATTAAAGCAGAAAAGGAAGAGGATATAGACTATTTGGGACAATTCGAACCGGAATGCTTTGTTGAATTAAAGATAGAGGAACCGGATCATAAAATGGCCATAGATAACAGCAATGAAGAtgttttaagcttaaaaaaggACGAGGAAACTTTAAAGGAAGAGGATGACAAAAGCCCACTTTCAACAGAATCtgataatgaaaatgttaaaagaaatgaTCAGGTTGGAACCAAAAAAGTTACTAAAGATAGTAGTGATTTTTTAAACGATGATAAAAGTGTTAACAATTCAGATTCAGATTGGAAAGATGATAAAGTTAATGTTGAGAatacaaaagttaaaaagaaaactcgaacgaaatgtaaaaaaaccTCCTATAATCCTGATGATGATATTGCTGTACCCTGTGaagaatgtaataaaatatttaacaattccAAAGCTCTGGCTCGGCACAAACGCAATACACACATACCAGAAGAACAAAAATGCACCTGTCCCTTGTGTGGCCGTAGATTTTCACGTTCTtgtaatatgtataaacatatgcGTACATTTCATGGTCCCGATTCAGTTCCTCTAATACGTAAACCTTCCACCAAGGCACGACAGTTTCAGTGTGATAAATGTGAAAGAAATTACACTAAAAAAAGTCATTTGAATttacatattaaagaaaaacataacaatAACGAAGAGGGATCAGAAAAACAAACGTCAAACGGTGAGGATACTGCTCAGGCTGCTGAAGAAGATTCTGTTAAAAAGGATAAACCTAAAAAGAGATATGAAGTACGTTCCTTATGTTCGATATGCGGTTCTTCATTTGCCAGTCGTACTCATTTGGTGGTACATATGCGACGTCACACAGGTGAGCGTCCCTTTAAATGTGATCTCTGTGATCGAGCCTATCCACGTCCGTCAGAACTCGTTTGCCATAGGCGTATACATACCGGTGAAAAACCGTTTAAATGTAAGATTTGTGATAAAGCTTTTCGTGTCTGGAGTAAAATGAGCAATCATATGCGTTCTCATACCGATATACGGCCCTATAAGTGTACACAATGTGAGCgaagttttaaatattccaaagatttaaatattcattttcgTATACATACGGGAGAGCGTCCCTATAAGTGCAATGTTTGTGGCAGTACATTTACTCAAAcaaacaaaatgaataccactgaaaaattacaaaagcaaCAATGTCGTACTTGTTACAATGCCACCAAAGGCTTAAAACCTTTAACAGATCTGACCAAATGTGGTGGTGGTAGCCAACAAATATCCTATGCCGAACTGCTGGCTGATATTTCCAATATAAATataATGGAGGATTTTTACAATGAATTGCCACAATTTATATGCGAGGCCTGCCAACGCAAATTGAAAGCTGCTCAGGCATTTATACAGCAAACTCATGAGGTTAATGAACGTTTAATATCAATGCTGAGTAATCAAAAAGATACTTCCACTACggaatttacatatttagaagaGGCTCCGGTTCAAGTTAAAATGGAATTTGAGGATAGTTTGCCTGAACCTGAAGCTGAGCAACAATGGCATGATGATCTGAAAGATGATGAAGAAAGTGCAGCTGGTTTAGAGAGCGGTGTGATAGAGGGCAATGATGGCGTGGACTTAGAAAAGCAATCAAATAATATGGAAACACAAATAGaagaaatagagaaaaataaagaagaaccTCCTCTTGAAACAAACACAAGTGATGAGGATAATGTGGCAGTTGCCTGTAAAAAATGtgataaagtatttaataattcCAAAGCCCTAACAAGGCATTTACGCATCACCCACATACCAGATGATCAAAAATGTTCATGTCCAATATGTTTTAGTAAATTCACAAGAGCCTGCAGTATGTATACACATATGCGTACATTTCATGGTTCCAATACTGTGCCGCTCGTACGGAAACCCTTAACGCAGGATAGGATGTTTCAGTGTGAAAAATGTccaaaaaattatacacaaaagAAATATCTTGATGTTCATGTTAAAACCAAACACACCCAAACAATAGAGGAGAAAGAGGAAAGCAAGGAAATAATGCCAAAAATTAACCGTAAACCTTTGTGTTCCATTTGTGGCAGTTCATTTCCCAATAAAACTCATCTAATGGTACACATGCGTCGTCATACGGGTGAGCGTCCATTTAAATGTGATCTCTGTGAACGTGCTTTTCCCCGTCTAGTAGAGTTGACCTATCATCGACGTATTCACACGGGTGAAAAACCATTTGAGTGTAAAATTTGTGGTAAAACTTTTCGTGTTTCTAGCAAAATGACCACTCATATGCGTTCACATACGGATATACGACCCTATAAATGTACACAATGTGAACGcagttttaaatattccaaagaTTTAAATATACACTTTCGTATACATACGGGAGAGCGTCCCTATAGTTGCAATGTTTGTGGCCACACTTTCACCCAGAGTAATAGCCTTAAGACTCATCGTATTAAATTGAATCATTTGGAAAtaAATTCTTCAAATGGTGTACAAAATGATATAACACAAATGCTGGCACTACTTAATAGAAAAATGGATATATTAACACAAAACAATGAAATCCTGAAGCATCAAATGAGAGATATAAAGAATCAAAATACTTTAGTGCTAAATGTTTTAAGCGAAAATACCGATGCTATAGAAaagtcattaaataaaaatcctagatttttaaaaatatttccgatAAGTACTATAgaacaattaaatgaaatagaAGATAATATTAATGAACAAAATGAAAAGGATTATATTGCTTCCATAAGAGCAATAGCTGGTCAACGTGGCCTTAAGAAGGGCCTATCCGATATAATGACACCCAAACTTTTGGTAGAATTCAATGTTGATGGCAGTCATAATAAACAACGTCTTTTGAATTATACcaaatttgttaatgttttatttcATGGAACTTATGATgaaaattgcactgaaaaatcGTTTAAATGTCATTTAAGGGATGCtttaaaattggttaaaaatcgttatttcaaagaaaaatgtatatctAAGGATAAGAGTGATAATGTAGCCAAGGAAATTGCAGCTTCTAAATTGAGTGATACTCAAGATAATTTGGAAAAGCAACAATGTCGTGCATGTTACAATGCCAATAAAGGCCTTAAGCACTTAACCAAATGTATTGGCGGTCTGCAAAAGAAATCCTATGGAGAACTCTTAAGGGAGGTATCCAATATAAATATAATGGATGAAGCTTATAAGGAATTGCCACAATTTATATGTGAGAGCTGTTCACGCAAACTAAAAGCCTCAAATGCATTCATACAACAAACCCATGAAGTGAATGAACGTTTAATGGCTATGTTAATGGGAAGAGAGGAAATAAATAATCATTTGGATTGTCTGCAGGAGGCTCAGGTGGATATACAGTCTTGTTTGGAAATAAAAATGGAACATGATGAGGCTGGAGCGGAGCCAACAGCTGAAGAACCTTGTTCTGTTGCATTAAAGTTAGAGGAGCCGGAagatttttcacaaattaatcATCATAATGTTCAGGAATTGGGTGGAAAAAAGGACAATGAAGATGAAAATAATTCGTTGGAACTGAtaactttaaaagaaacaaatgaagCAAAAACTGACATAAATGCTTCAGAACATCAAGCTAATGAAGATATATTGAATGTAGATACAACAAGGGCTGATGATAAAACAAAACCTTTAACAGATTTATTCCTTGCCGATGAAGGGAATATTGATGATAATGGCACTTGCAATAAAAACAGTGACTCTGAAGACGAAGATTATCAAGACGACTTAACAGATGATATGGACTGGCAAAAAGAGCAAAAAACCAACAGCTCAAATAGTAAAAAAgatgataaaaagaaaattacaaaaaaatcacgAAAATCTGAAGAAACCACCGAAGATGATGATGTGGCTGTACCCTGTAATCAGTGTAataagatatttaataattcCAAAGCTTTAGCACGACATCAACGCACTAGTCACATACCAGAAGAACAAAAATGTACTTGTCCATTgtgttttcgaaaattttcccgTTCCTGTAATATGTATACACACATGCGTACTTTTCACGGTCCCGATACAGTGCCGCTCATACGTAAACCCTCGACACAAGAGAGAATCTTTCAGTGTGACAAATGTCCTAGGAATTATACGAAAAAGAAACatcttaatatacatataaaaaataaacacagtcaAGAGAATGAGATGACGGAAACAAATGCAGAAAAGTCAACAGAAGAGCTAAAGGAGAGAGTTGAAGAAACGCCTGTCAAACCCAATAAACCGAAAAGATACGAGGTACGTTCTTTGTGCTCCATTTGTGGCAGCTCATTTTCCAGTAAAACTCATCTCATAGTACATATGCGACGTCATACAGGCGAACGACCCTTTAAGTGTGATCTCTGCGAACGTGCCTATCCTCGCATCTCGGAATTAACCTGCCATCGACGCATACATACGGGTGAAAAACCATTTGCCTGTAAGATATGCGGTAAAACTTTTCGTGTTTCCAGTAAAATGACCACACACATGCGTTCACATACCGATATACGACCCTATAAGTGTACACAATGTGAACgtagttttaaatattccaaagaTTTAAGTATACACTTTCGTATACACACGGGTGAGAGGCCATATTGTTGTAATGTTTGTGGCAGTACGTTTACGCAAAGTAATACACTAAAAGCTCATCGTGTAAAGTTGGGTCATATGGATAGTGTTGTGGAAatgaatacaaataatttagtttag
Protein Sequence
MITQDPLEEYQQHCRTCYNSKNNLQLLKSLPESWTNQNEPKTYAELLTEVCQIDLTEAVTQSDLWPQFICLTCCEKLKSAYDFIQQTHKINKYLKTLSGQLQTKTEHFIEIPELDIPLDIKMEKDNDVELAVNVGVFQYNSLERKEDAVKTDIASSVDSLLEKVEAIKSDKVDTVDNDFDDRVKNESKTTQSLEVNNNNIEFQCDKCKIILPNALKLKRHVYQRHCPHCDMFFKKSSKLKYHILTRHTAKNNANIIIEKKFSCKKCLSKFKTSQQLRNHNYRMHMPSECIFLCSQCGQTFEESDEFKKHMLDEHDENVMVQQSFKLSCNKLQSMDYINKNLLKSPTNESTHQTLTCSECHKIFATVQKLNHHKRFNHVPEDKKLPCHICNMKFSRTYHLKRHLQNVHAPSTKGEIVKKDQNPKTIMDINTAMHCNQCGKIFYNSQKFSRHQRHAHVPDEKKFVCHMCGQKFGRSDHFRRHMRNLHQTDVKKLNKEQCRACYNSTKGLRLLTNLTKCSGEDQQQKSYAELLKEVANINIMEDLYREQMPHSICEICIRRLKTAHTFIQQTQEVNERLLAIAEQLETDKQLKCLQEPPVDIVVTDNIKAEKEEDIDYLGQFEPECFVELKIEEPDHKMAIDNSNEDVLSLKKDEETLKEEDDKSPLSTESDNENVKRNDQVGTKKVTKDSSDFLNDDKSVNNSDSDWKDDKVNVENTKVKKKTRTKCKKTSYNPDDDIAVPCEECNKIFNNSKALARHKRNTHIPEEQKCTCPLCGRRFSRSCNMYKHMRTFHGPDSVPLIRKPSTKARQFQCDKCERNYTKKSHLNLHIKEKHNNNEEGSEKQTSNGEDTAQAAEEDSVKKDKPKKRYEVRSLCSICGSSFASRTHLVVHMRRHTGERPFKCDLCDRAYPRPSELVCHRRIHTGEKPFKCKICDKAFRVWSKMSNHMRSHTDIRPYKCTQCERSFKYSKDLNIHFRIHTGERPYKCNVCGSTFTQTNKMNTTEKLQKQQCRTCYNATKGLKPLTDLTKCGGGSQQISYAELLADISNINIMEDFYNELPQFICEACQRKLKAAQAFIQQTHEVNERLISMLSNQKDTSTTEFTYLEEAPVQVKMEFEDSLPEPEAEQQWHDDLKDDEESAAGLESGVIEGNDGVDLEKQSNNMETQIEEIEKNKEEPPLETNTSDEDNVAVACKKCDKVFNNSKALTRHLRITHIPDDQKCSCPICFSKFTRACSMYTHMRTFHGSNTVPLVRKPLTQDRMFQCEKCPKNYTQKKYLDVHVKTKHTQTIEEKEESKEIMPKINRKPLCSICGSSFPNKTHLMVHMRRHTGERPFKCDLCERAFPRLVELTYHRRIHTGEKPFECKICGKTFRVSSKMTTHMRSHTDIRPYKCTQCERSFKYSKDLNIHFRIHTGERPYSCNVCGHTFTQSNSLKTHRIKLNHLEINSSNGVQNDITQMLALLNRKMDILTQNNEILKHQMRDIKNQNTLVLNVLSENTDAIEKSLNKNPRFLKIFPISTIEQLNEIEDNINEQNEKDYIASIRAIAGQRGLKKGLSDIMTPKLLVEFNVDGSHNKQRLLNYTKFVNVLFHGTYDENCTEKSFKCHLRDALKLVKNRYFKEKCISKDKSDNVAKEIAASKLSDTQDNLEKQQCRACYNANKGLKHLTKCIGGLQKKSYGELLREVSNINIMDEAYKELPQFICESCSRKLKASNAFIQQTHEVNERLMAMLMGREEINNHLDCLQEAQVDIQSCLEIKMEHDEAGAEPTAEEPCSVALKLEEPEDFSQINHHNVQELGGKKDNEDENNSLELITLKETNEAKTDINASEHQANEDILNVDTTRADDKTKPLTDLFLADEGNIDDNGTCNKNSDSEDEDYQDDLTDDMDWQKEQKTNSSNSKKDDKKKITKKSRKSEETTEDDDVAVPCNQCNKIFNNSKALARHQRTSHIPEEQKCTCPLCFRKFSRSCNMYTHMRTFHGPDTVPLIRKPSTQERIFQCDKCPRNYTKKKHLNIHIKNKHSQENEMTETNAEKSTEELKERVEETPVKPNKPKRYEVRSLCSICGSSFSSKTHLIVHMRRHTGERPFKCDLCERAYPRISELTCHRRIHTGEKPFACKICGKTFRVSSKMTTHMRSHTDIRPYKCTQCERSFKYSKDLSIHFRIHTGERPYCCNVCGSTFTQSNTLKAHRVKLGHMDSVVEMNTNNLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00922257;
90% Identity
-
80% Identity
-