Lser012641.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lucilia sericata
Gene Symbol
ftz-f1
Assembly
GCA_015586225.1
Location
NW:170545-226273[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 2 1.4e+04 -11.5 28.9 86 165 90 168 24 210 0.43
2 3 6.6e-20 4.7e-16 58.9 0.5 1 76 360 436 360 468 0.68
3 3 2.2e-72 1.6e-68 231.7 2.0 155 408 535 781 511 783 0.91

Sequence Information

Coding Sequence
atgttattaaaaatggaACAACAACAAGCGACGGCGTCGTTTATATCGTCGCTAAATATGTCACCATTTTCATTGCAATTGGAACAGGATCAGCCTTCCTCACCAGCTCTGGTAGCTGGTAATAATTCGAATTCCAATCAACAACatctattaaataataatcaaaataataataacaacaacaacaacaataataacaataatacggATAATGATTTAACTAATGCCAATGATGATTATAGTTCTTATACTTTACATTTAACCAATACAAgtcatcaacagcagcaacaacaacagcagcagcaacaacaacatcatcaccagcaacaacaacaacatcactaCCATCAGCAACAACCTCAACACTACCAACAGCCAcctcaacaacaacagcagcagcaacagcaacaacaacaaaatattgccAATAATCCCAATTTTCAATATTCCTACATCTATAACATCGATTCTCAATATATTTTTCCCACAGGTTATCAGGATACCACCTCCTCCCATTCACAACAGAGCGCCAATGGCGGCAATGGTCCTTCCTCAAATCAAACCACCTCCAATCCCTCAGCCGGCGTCTCCCTTATAAATGGGGTTGTCACTCTCAATTCAGCCCAAAATTCTGCCCTTATCGGTAGTGCTGGTGGTGGCAGTAATAATGGCGGCTCTTCGGCTTCATCAGCCTCAGGCACTTATATGTCCCTATTGCCACCAAATGTTGGTGCCACCAGCTCTTCCACCGGCCACTTAGTGGGTGGGGTTAATGCTTTGGGCGGTGGCGGCGGTGGTGGTGGTACCAGTGCCTCTGCCACTGGCTCAACGCCTGATGTTATTGATTTCAAACATCTATTCGAGGAACTGTGTCCTGTGTGTGGTGATAAGGTCAGTGGCTATCATTATGGTCTGCTGACGTGTGAATCGTGTAAAGGTTTCTTTAAGCGTACAGTACAAAATAAGAAAGTGTACACGTGTGTAGCGGAACGTTCGTGTCATATTGATAAGACACAACGTAAGCGTTGTCCATATTGTCGTTTTCAAAAGTGTCTCGAAGTGGGCATGAAATTAGAAGCTGTGAGAGCCGATCGTATGCGCGGCGGTAGAAATAAGTTTGGACCCATGTACAAAAGAGATCGAGCGCGAAAATTGCAAGTGATGCGACAACGACAAATAGCATTGCAGGCCTTACGAACGTCTATGGGAACGGGAGAAATCAAACCGACACCTCTATCGCCCGGCTATCAACAGGCCTATacaaatatgaatataaaacaAGAAATACAAATACCTCAGGTATCCTCTCTAACACAATCACCCGACTCATCACCCAGCCCCATTGCTATTGCCTTAGGTCAGGTTAATGCCAGCTCTGGTGTGATAGCAACACCTATGAATGGCAGTAGTGGTGCTGGTGGTGGCGGAGGAGGCGGCGGCGGTGGTGGTGGCAATAGTGgtaataacaacagcagcaatacAAGTGATGGCATCAACCGCGTTGGTAGTGGCAGTGGTGGTGGCAGTGGTAATTGCCATGAAACTGGCACAGGATCCTTACAAAGTGCCAGCGATTCAAAATTGTGCTTCGATTCGGGCACACATCCTTCTAGTACCGCCGATTCCATAATAGAACCTCTAAGGGTCTCACCGATGATCAGGGAATTTGTACAGTCAATAGATGACAGGGAATGGCAAACGCAATTATTTGCGTTGCTGCAAAAACAAACGTACAATCAAGTTGAAGTGGATCTCTTTGAATTAATGTGTAAAGTTTTAGATCAAAATCTATTTTCCCAAGTTGATTGGGCCCGCAACACTGTGTTCTTTAAAGATTTGAAGGTCGACGATCAAATGAAACTTCTACAACATTCATGGTCCGATATGTTAGTATTGGATCATCTGCATCAGCGCATACACAATGGCCTGCCGGACGAGACCCAACTGAATAATGGTCAAGTCTTTAATCTCCTTAGTTTAGGCCTACTGGGCGTACCACAGCTCTCCGATTATTTCAATGAATTGCAaaataaattgcaagatttgaaATTTGATATGGGCGATTATGtgtgtatgaaatttttaattttattaaatccaGATGTACGAGGTATTATCAATAAGAAAACTGTATTGCAGGGTCACGAAAATGTACAAGCAGCGTTATTAGATTATACATTAACGTGTTATCCATCTGTGACGGATAAATTTAGGAGGCTGTTAAGTATACTGCCCGACATACATGCGATGGCAGCGCGTGGTGAAGAGCACTTATATTCAAAACACTGCGCTGGCAGTGCACCCACACAAACGTTACTCATGGAAATGTTGCATGCAAAaagaaaagtgtaa
Protein Sequence
MLLKMEQQQATASFISSLNMSPFSLQLEQDQPSSPALVAGNNSNSNQQHLLNNNQNNNNNNNNNNNNNTDNDLTNANDDYSSYTLHLTNTSHQQQQQQQQQQQQHHHQQQQQHHYHQQQPQHYQQPPQQQQQQQQQQQQNIANNPNFQYSYIYNIDSQYIFPTGYQDTTSSHSQQSANGGNGPSSNQTTSNPSAGVSLINGVVTLNSAQNSALIGSAGGGSNNGGSSASSASGTYMSLLPPNVGATSSSTGHLVGGVNALGGGGGGGGTSASATGSTPDVIDFKHLFEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPYCRFQKCLEVGMKLEAVRADRMRGGRNKFGPMYKRDRARKLQVMRQRQIALQALRTSMGTGEIKPTPLSPGYQQAYTNMNIKQEIQIPQVSSLTQSPDSSPSPIAIALGQVNASSGVIATPMNGSSGAGGGGGGGGGGGGNSGNNNSSNTSDGINRVGSGSGGGSGNCHETGTGSLQSASDSKLCFDSGTHPSSTADSIIEPLRVSPMIREFVQSIDDREWQTQLFALLQKQTYNQVEVDLFELMCKVLDQNLFSQVDWARNTVFFKDLKVDDQMKLLQHSWSDMLVLDHLHQRIHNGLPDETQLNNGQVFNLLSLGLLGVPQLSDYFNELQNKLQDLKFDMGDYVCMKFLILLNPDVRGIINKKTVLQGHENVQAALLDYTLTCYPSVTDKFRRLLSILPDIHAMAARGEEHLYSKHCAGSAPTQTLLMEMLHAKRKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00817464;
90% Identity
-
80% Identity
-