Lcup001250.1
Basic Information
- Insect
- Lucilia cuprina
- Gene Symbol
- ftz-f1
- Assembly
- GCA_001187945.1
- Location
- JRES01000836.1:366431-524524[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.28 2e+03 -2.5 1.6 62 95 32 73 7 108 0.38 2 6 0.78 5.5e+03 -3.9 5.5 63 153 185 283 161 299 0.47 3 6 2 1.4e+04 -21.5 39.1 76 200 301 441 195 446 0.58 4 6 2 1.4e+04 -5.5 21.2 23 114 419 507 415 553 0.49 5 6 1.1e-19 7.6e-16 58.2 0.6 1 76 705 781 705 812 0.68 6 6 2.8e-54 2e-50 172.1 2.2 155 360 883 1081 860 1084 0.89
Sequence Information
- Coding Sequence
- ATGGACGATTATTCAGTGCCTATATTGGCGAATAGTTCAACATTTAACCACAACAGCAACACTACTAACATTAatcacaacaataataatattaacagcagcaacaacaatatcaatatGCATCACCATAAAGATCATATGTTGGCAGCTGGTAGTACACCCAGTACTACATCATTTATGTATGAAACAACAACACCCTCCAACAACTCCAAAGGAGAAATGTCCATGGCAAAAAGTGATTATAGTACTTTTACCACTTGTATACAACAATCTGCGTTACTCGATCATCGCCATTCAGCCATAGATGCTAATTTAGATGCTGGTGTTTCTTTGGGTGCTCTATGTGATTTGAAATTTTCCGGAGGCTCCAGCTCTATAATGGGAGGTGctaatttaattaatgaaacaaatacaaattttaaaggtTTACCACCCTTAATGGGGACTATAGAAAGTAATCATATAATGAGTGGCCTACAGAAGCTGAATACAACGGCGGGTGTTGTTAATGCACCCACGTTTTCTAATCTACTATTTGCCAGAGAAGCTACACAGAAccttaataatacaaataacaataataataatgtgtcTGCAGTAAACAGTTCACATTATTTAACGCTGAAAGGTAATGAAGTACAAAGCACTGCCGAAACCACAACACAAACACAAACGCATCACTATTTACCAAATACTAATATAACAGCCAGACAAATGTCACCACCGATTGAAATTCTACAAAGAGTAACAACAGCCGATAATCATAATCTATTAGATTATGGCATTGCCAGTTCATCTTCCTCTGCAGCAGTTAACACAACTACTTCATCTTCATCACTTACTTTACATCATAATCTAAATACTAACAGAGAGAGGGGTGTCAATCACAGTGGCTTGGAAAGTGGTGTTAATGCTCTTAATGAAAATCATATAACTACCacaacagctacaacaacaaatgataCAACACCACCCAACACTgccaacatcaacaacaacaacactacacATCATACAACACAACAGTTGCAGCAgcaaaatgcaacaacaacagccaccTCTACCACGACCAGTACAAGATCAACACTCCACAGTATTGAAGAATTAGCGGCCAGTTCCTGTACTCCCTCATCCTCAACAACAGCTCCACTAAATACTCttgtaaataacaacaataacaatgcaACATCTTCAACAACAATAACCCAAACATCAGCTACAACAGTacctttaattataaacaataatgaaacagctaagcagcaacagcaacaacatcttCAAGAAGCTACAAAATCTGCTAATAACCAGCAGCAAAATCAATTGTCTCAACAGCAAATGACTCTGCAACATCAACATAATCAGCAGcttcaacaacatcatcaccaacatcagcaacagcagcagcatcaacaacaTTTGCTTAATTCTTCTACTTTGAGTAGTGATAGCAATGATTCGATTTCTTCATCGGATGAATATATTGATATGGAATTAAATGAAAGATCGGGTTATCAGGATACCACCTCCTCCCATTCACAACAGAGCGCCAATGGCGGCAATGGTCCTTCCTCAAATCAAACCACCTCCAATCCCTCGGCTGGCGTCTCTCTTATCAATGGAGTCGTCACTCTTAATTCAGCCCAAAATTCTGCCCTTATCGGTGGTAGTGGTAGTGGTGGTGGCAGTAATAATGGCGGCTCTTCGGCCTCTTCAGCCTCAGGCACTTATATGTCTCTGTTGCCACCAAATGTTGGTGCCACCAGCTCTTCCACCGGCCACTTAGTGGGTGGTGTTAATGCTTTGGGCGGTGCCGGCggtgttggtggtggtggtggtaccAGTGCCTCTGCCAGTGGTTCAACGCCTGATGTTATTGATTTCAAACATCTATTCGAGGAACTGTGTCCTGTGTGTGGTGATAAGGTTAGCGGCTATCATTATGGTCTGCTGACGTGTGAATCGTGTAAAGGTTTCTTTAAGCGTACAGTACAAAATAAGAAAGTGTACACGTGTGTAGCGGAACGTTCGTGTCATATTGATAAGACACAACGGAAGCGTTGTCCATATTGTCGTTTTCAAAAGTGTCTCGAGGTAGGCATGAAACTAGAAGCTGTGAGAGCCGATCGTATGCGCGGCGGTAGAAATAAGTTTGGACCCATGTACAAAAGAGATCGAGCGCGAAAATTACAAGTGATGCGACAACGACAAATAGCATTACAGGCCTTACGAACGTCTATGGGTACAGGGGAAATTAAACCGACACCTCTATCGCCCGGCTATCAGCAGGCCTAtacaaatatgaatataaaacaagaaataCAAATACCTCAGGTATCCTCTCTAACACAATCACCCGACTCATCACCCAGCCCCATAGCTATTGCCTTAGGTCAGGTTAATGCCAGCTCTGGTGTGATAGCGACACCTATGAATGGCAGTAGTGGtgctggtggtggtggcggtggaGGCGGcggtggcggtggtggtggtggcaatAATGgtaataacaacagcagcaatacaAGTGATGGTATCAACCGCGTTGGTAGTGGCAGTGGTGGTGGCAGTGGTAATTGCCATGAAACTGGCACAGGATCCTTACAAAGTGCCAGCGATTCAAAATTGTGCTTCGATTCGGGCACACATCCTTCTAGTACCGCCGATTCCATAATAGAACCTCTAAGGGTCTCACCGATGATCAGGGAATTTGTACAGTCAATAGATGACAGGGAATGGCAAACGCAATTATTTGCGTTGCTGCAAAAACAAACGTACAATCAAGTTGAAGTGGATCTCTTTGAATTAATGTGTAAAGTTTTAGATCAAAATCTATTTTCCCAAGTTGATTGGGCCCGCAATACTGTGTTCTTTAAAGATTTGAAGGTCGATGATCAAATGAAACTTCTACAACATTCATGGTCTGATATGTTAGTATTAGATCATCTGCATCAGCGCATACACAATGGCCTGCCGGACGAGACTCAACTGAATAATGGTCAAGTCTTTAATCTCCTTAGTTTAGGCCTACTGGGCGTACCACAGCTCTCCGATTATTTCAAtgaattgcaaaataaattgcaaGATTTGAAATTCGATATGGGCGATTATGtgtgtatgaaatttttaattttactaaatccAGATGTACGAGGTATTATCAATAAGAAAACTGTATTGCAGGGTCACGAAAATGTACAAGCAGCGTTATTAGATTATACATTAACGTGTTATCCATCTGTGACGGTAAGTGTttga
- Protein Sequence
- MDDYSVPILANSSTFNHNSNTTNINHNNNNINSSNNNINMHHHKDHMLAAGSTPSTTSFMYETTTPSNNSKGEMSMAKSDYSTFTTCIQQSALLDHRHSAIDANLDAGVSLGALCDLKFSGGSSSIMGGANLINETNTNFKGLPPLMGTIESNHIMSGLQKLNTTAGVVNAPTFSNLLFAREATQNLNNTNNNNNNVSAVNSSHYLTLKGNEVQSTAETTTQTQTHHYLPNTNITARQMSPPIEILQRVTTADNHNLLDYGIASSSSSAAVNTTTSSSSLTLHHNLNTNRERGVNHSGLESGVNALNENHITTTTATTTNDTTPPNTANINNNNTTHHTTQQLQQQNATTTATSTTTSTRSTLHSIEELAASSCTPSSSTTAPLNTLVNNNNNNATSSTTITQTSATTVPLIINNNETAKQQQQQHLQEATKSANNQQQNQLSQQQMTLQHQHNQQLQQHHHQHQQQQQHQQHLLNSSTLSSDSNDSISSSDEYIDMELNERSGYQDTTSSHSQQSANGGNGPSSNQTTSNPSAGVSLINGVVTLNSAQNSALIGGSGSGGGSNNGGSSASSASGTYMSLLPPNVGATSSSTGHLVGGVNALGGAGGVGGGGGTSASASGSTPDVIDFKHLFEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPYCRFQKCLEVGMKLEAVRADRMRGGRNKFGPMYKRDRARKLQVMRQRQIALQALRTSMGTGEIKPTPLSPGYQQAYTNMNIKQEIQIPQVSSLTQSPDSSPSPIAIALGQVNASSGVIATPMNGSSGAGGGGGGGGGGGGGGGNNGNNNSSNTSDGINRVGSGSGGGSGNCHETGTGSLQSASDSKLCFDSGTHPSSTADSIIEPLRVSPMIREFVQSIDDREWQTQLFALLQKQTYNQVEVDLFELMCKVLDQNLFSQVDWARNTVFFKDLKVDDQMKLLQHSWSDMLVLDHLHQRIHNGLPDETQLNNGQVFNLLSLGLLGVPQLSDYFNELQNKLQDLKFDMGDYVCMKFLILLNPDVRGIINKKTVLQGHENVQAALLDYTLTCYPSVTVSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -