Lcup000497.1
Basic Information
- Insect
- Lucilia cuprina
- Gene Symbol
- -
- Assembly
- GCA_001187945.1
- Location
- JRES01001497.1:3-1964[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-11 2.3e-08 33.3 0.0 1 38 196 234 196 239 0.89 2 4 4.5e-14 7.2e-11 41.3 0.0 2 39 251 288 250 291 0.94 3 4 5.3e-18 8.3e-15 53.9 0.0 1 45 305 350 305 350 0.98 4 4 1.6e-19 2.5e-16 58.8 0.0 1 43 357 400 357 402 0.96
Sequence Information
- Coding Sequence
- ATGATACAACGGCTCGATCAATCTCCCATGCATACGATTCACCATCAGACCGGTGACGAATCAAATTCGAATCTGGTACAGCATATAAAGAGTGAAGTAATCGATGCCAAACAacaccaacagcagcagcaacaacagcagcaacaagcTGCTGCTGTAGCTGCCGCTCATCATCAAGCTCAACAGCAGCAGTTGCATGCACAACAATTAGCAGCAGCGCAAGGACAAAcacatcagcagcaacaacagcaacaggcccaccagcagcagcaacaacagcagcaggcACATCAACATCACCAACAGCAACAGGCCcaccagcagcagcatcatcagGAAATAACCGGAGCCACCGTTATGGAGATTGATCCGAGCCAAATAAAACATGAGCCGGGCATGATAATAACACCGGAAATTGTAAATATGATGACGACAGGGCATATGGACATGTACAATTCCGATACGAGCGATGATTCAATGATGATTGCCAACGGTTCACCACATGATCAAAATGAACCCCATTATACGAATTTAGATCAACAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACCACACTTTGGCAAAGGGCCCACCGCATGGGCATCGAAACACCGAAGAAGGAAGGAGGTACAAAATCATGGAACGAAGACTCACTCAACAATGCACTGGAGGCTTTGCGTTCGGGACAAATATCGGCGAATAAAGCATCGAAAGCCTTTGGTATACCTTCGTCAACGTTGTACAAAATAGCACGACGTGAAGGTATACGATTGGCAGCGCCTTTTAATGCCGCCCCCACCACCTGGACGCCGGAAGATTTGGAAAGGGCCTTGGAGGCAATACGTGCTGGGCATACATCGGTACAGAAGGCAAGTGCAGAATTTGGTATACCCACAGGCACATTATATGGTCGTTGTAAACGTGAGGGCATCGAATTATCCCGTTCAAATCCTACACCCTGGTCTGAAGATGCTATGAATGAAGCTTTAAATTCTGTGCGCATTGGCCAAATGTCTATAAATCAAGCTGCTATCCATTATAATTTACCTTATAGTTCTTTATATGGTCGTTTTAAGCGTGGTAAATACGATGTAGCCAATACGAGTGGTACTTCCATCAATAATACATCGGGCAATACCTCTGGTAGTATTGAAATTATTGAACATAGTCAAGAGAATTCGgtaagtatt
- Protein Sequence
- MIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEVIDAKQHQQQQQQQQQQAAAVAAAHHQAQQQQLHAQQLAAAQGQTHQQQQQQQAHQQQQQQQQAHQHHQQQQAHQQQHHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGTSINNTSGNTSGSIEIIEHSQENSVSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00653473;
- 90% Identity
- -
- 80% Identity
- -