Egra003274.1
Basic Information
- Insect
- Ephydra gracilis
- Gene Symbol
- -
- Assembly
- GCA_001014675.1
- Location
- JXPQ01023462.1:1-7160[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-11 3.2e-08 33.4 0.0 1 38 165 203 165 208 0.89 2 4 3.8e-14 9.9e-11 41.4 0.0 2 39 220 257 219 260 0.94 3 4 3.8e-18 9.9e-15 54.2 0.0 1 45 274 319 274 319 0.98 4 4 2.5e-20 6.4e-17 61.2 0.0 1 43 326 369 326 371 0.96
Sequence Information
- Coding Sequence
- CCCACCGAACCGCTCGATATCGACAATCATTTACATCAACATATGATACAACGGCTCGATCAATCTCCCATGCACACAATACACCACCAGACTGGCGACGAGAGCAATTCCAATTTAGTGCACCATATCAAAAGAGAAGTTATTGATGCCaaacatcagcaacagcagcaacaacaacagcatcatcATCAAACACAACAACATCAGCTGCACACCCAGCAATTGGGCCAAGGCCagtcacaacagcaacagcaacaccaacaccaacagcaacagtcacaccaacagcaacaacagcaggcgGCACACCATGCACACGCACAACAAGTGCAATCACATCAAGAAATAACTGATATGTACAATTCGGATACGAGCGAGGACTCAATGATGATTGCAAATGGCTCGCCACACGACCAAAACGAGCCACATTATACAAATTTAGATCAACAACATGCCGATATTAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAATATGAGCTTAACAAAAGCATCGGTTACCTATGGTATACCATCGACAACATTATGGCAACGTGCCCATCGCATGGGCATCGAGACGCCAAAGAAGGAAGGTGGTACAAAATCATGGAATGAGgattcattaaataatgcattaGAAGCGCTACGCTCGGGACAAATATCAGCGAATAAAGCATCGAAAGCCTTTGGCATACCATCGTCGACATTATATAAAATCGCACGACGCGAGGGTATACGTCTGGCGGCGCCATTTAATGCGGCGCCAACCACATGGACGCCAGACGATCTGGAGCGTGCATTGGAAGCAATACGTGCTGGTCATACGTCCGTCCAAAAGGCTAGCGCTGAGTTTGGCATACCAACGGGTACACTGTATGGACGCTGCAAACGTGAGGGCATTGAATTGTCACGTTCCAATCCAACGCCATGGTCGGAAGATGCTATGAACGAAGCTTTAAATTCAGTACGCGTTGGCCAAATGTCCATTAATCAGGCGGCTATACATTATAATCTACCCTATAGCTCATTGTATGGACGGTTCAAGCGCGGCAAATACGACGTAGCTAACACGAGCAgtgcaacattaaataatacatCCGGCAATACATCGGGaagtattgaaataattgagcaCAGTCAAGAAAATTCGGTAAGTTATACGCAAGCTCTTAAAGCGATACTCATTGATGAGCATGAAGAGCACTGA
- Protein Sequence
- PTEPLDIDNHLHQHMIQRLDQSPMHTIHHQTGDESNSNLVHHIKREVIDAKHQQQQQQQQHHHQTQQHQLHTQQLGQGQSQQQQQHQHQQQQSHQQQQQQAAHHAHAQQVQSHQEITDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHADIKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPDDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSSATLNNTSGNTSGSIEIIEHSQENSVSYTQALKAILIDEHEEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00921362;
- 90% Identity
- -
- 80% Identity
- -