Lcup009279.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lucilia cuprina
Gene Symbol
dl
Assembly
GCA_001187945.1
Location
JRES01000096.1:191012-222764[+]

Transcription Factor Domain

TF Family
RHD
Domain
RHD domain
PFAM
PF00554
TF Group
Beta-Scaffold Factors
Description
Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.1e-69 3.8e-66 221.9 0.0 1 169 36 205 36 205 0.99

Sequence Information

Coding Sequence
ATGTATAACCCACCGTCTGTATCATCCACCTCATCAGCATCCTCGTCACCTACTTTCACAAATTTATCATCACAACCCAATATTCCAAATTTGGAAGGAGTTCGTCTTAAAATCGTAGAACAACCAGCACCAAAGGGACTACGTTTTCGATACATATGCGAAGGTCGCTCGGCTGGATCTATACCGGGTGTTCACTCAACGCCAGAGAACAAAACATTTCCCACCATCGAAGTGGAAGGCTATGAGGGAaaagttaaaattgttgtttcgTGTGTTACCAAAGATGAACCTTATCGACCACATCCACACAATTTAGTTGGTAAGGAGGGCTGTGAATATGGTGTTTGCCTGGCAACCATCAATGGCCCACCAATGAGAGCTGTTTTCAGCAATTTGGGAATACAGTGTGTTAAAAAGAAAGACATAAAAGCCGCTCTCGAAGAGCGAGAGAGGAAACGTATTGACCcgtttaaaaCAAGTTTTGCCCACAAAGATCAACCATCATCCATAGATCTCAATGTTGTACGTTTGTGCTTTCAAGCCTTTATACCATTACCAGGTGTCAAGAAACCTTATCCAATACCACCAGTGGTTTCAGATCCGATACATGATAAGAAATCGATAAATGATTTAGTTATCTGCCGTTTGTGTAGCTGCGCCGCCAAAGTAACAGGAGGTGATACAATTATTATGTTGTGTGAAAAAGTGCCCAAAGATGAtattaaaattcgatttttcgaATTGAGAAATAATGAGGTATATTGGGAAGACGTTGCACAATTTCAGCCGACCGATGTCCACAAACAAGCTGCTATTACCTTCAAAACTCCCCGCTACATCAATCCTGACGTAAAGCACAGCGTTCAGGTATACATACAATTATTCCGACCATCGGATGGAGAAACAAGTGAAGCGTTGCCGTTCGAATTTCATCCCGATCTAGGTATGCGAACATTTCCGCGTATACAACGCAAATTAAAACACAGACAAGACATGGAAATATTCCAGCAAATACTTTCGTTAGACAGTGAAACAACTGCGACCAAATATTCCGTACCCTCTTTGGTGGATGCTGATAATGATAACGACGATACTGTTACCAGTGACAGCTCAGCCAGTAAGCCTCTAAGTTCCGACACATTAAACGAGCACGACGAGGCGCGAAAACGTCAAAAAGAAAGTTTCGACGATGACAACGACGGTGATGCTGACGTTGATGATGACGAGGACAATGACAATGACGACACTGACAATTATAATTACATTGAACGTACAAACGGCGATATGGAAATTGAGGTGCCCGTACCTCTAATCACTTTTCCTACTATGGATGATGCCACACAGACTTCGACACCAGTTGAAGAGATTTTAGGGAAAAGAGAAATAGATTCGCTCGAATTAACGACTGTAGATAAAATCACCGAGTGGATGCAATCTAATGAGTTCGAACGTACCGACAGTCTTATAGTTGAAAATGGTGATATTTTATCATTAAGTGGCACTACGAATGCCATTAAAGAAGCTATGATTACAAGTCAAGACACAATTTCCTTAACAGATGACAATCGCATGAATACCGAACTAATCGAACAGGACATAGAACTAGACGACAGATATTGTTTGGAATTACTGGCCAAACGTAATATGGGTGATCAGTTACAGGGAGACTATAGTAGGGATTTAGCCGATGATGTAGAGAATTTAAATTGTTCTGCTAGTGCACAAGTGTCTGTAGATATTGATGAAAACTTTGACGAAACCGCTACTTATACTAGTCTTCAGATCGCATTGAAGAATCCAATTGAGATTCCTATGGATAATTCCCTATTAAAAGCTCAAGTCAAAACTAGTACTAATGAGAATCTTGAAAATgatttagttgttttaaaaaatcctcCGGCACCAAGAATAAAACTAAGCGCTGCTCAAACGCCTCAAACTCCGCCATCTCCCCCCATACCGTTGCCACCTAGAACACCTTCTCCTATTGGAGAACAATTTCTACCACCATTGCCCCCTAAGCGAAAACCTTCTCAAGAACTGTGGGCAGGCGCTAACACAGATACCTCACCTTGCAATACTGCAAATAGTAGTCGCAATAGTAGTATTTCTTCACGCCCTCCCTCACAAATTATTATCATGCGTACACCCGATCAAAGTCCTACTAAACGATCGGCGACCTCAACGCCTTCGCCcaagaaaaaacaaagtttcttcTCACGCTTGTTTTCGCGCAAGAAAAGCAAACCCGATACTACAGTTTCAGGTGATGAATCCAATTCGAAAGCGACTACTCCAAATCAAAGTCGTGAACCCAGTATTGGCAACTTTTCAATGAATGACAACAATCGTGCATCGATACGTTCGGTAAAATCTTTACAACCAAACTCCCTGGGACTTGAGCCTAAATGCAATGAGAAAACGGGAAAGGCTGTAGGTCGTAGTGCTAGTAGTGTATCGGGCAAACGCCCTATCCAACGTAATGCTGATGTTATTCATATACCCCTCAAGGGTGATAGCTCGGAAACATTAGGCAGGCAAGAAAGATCTTACTCGAGTTCATGCACTTTAAGATACGATGGCGGTCTTTTAGATCGCAAAACCTTAAGTGCATTACAATTGGCTGATATTCCGATATCAGATGGCAATATGGAACTTATAGCCATTGCCGATCGTCAAAGTATTAAGAATTTATGCGAAGGAGCCTATGGTGTAGTACTCGACCCCGGTGTAGATCTTTCAGAGGCCGAACATTTTGCTCTCTATACAAGTTTGCCATCAGAATGTGATGTAGGCAATGATGAGAATGTCTTCGCTAATCAACCAGTTTTAACACCCGAAGAAGTGGCAATGCGTTTGGCAGCAGCAAACGGCCTGCATTGA
Protein Sequence
MYNPPSVSSTSSASSSPTFTNLSSQPNIPNLEGVRLKIVEQPAPKGLRFRYICEGRSAGSIPGVHSTPENKTFPTIEVEGYEGKVKIVVSCVTKDEPYRPHPHNLVGKEGCEYGVCLATINGPPMRAVFSNLGIQCVKKKDIKAALEERERKRIDPFKTSFAHKDQPSSIDLNVVRLCFQAFIPLPGVKKPYPIPPVVSDPIHDKKSINDLVICRLCSCAAKVTGGDTIIMLCEKVPKDDIKIRFFELRNNEVYWEDVAQFQPTDVHKQAAITFKTPRYINPDVKHSVQVYIQLFRPSDGETSEALPFEFHPDLGMRTFPRIQRKLKHRQDMEIFQQILSLDSETTATKYSVPSLVDADNDNDDTVTSDSSASKPLSSDTLNEHDEARKRQKESFDDDNDGDADVDDDEDNDNDDTDNYNYIERTNGDMEIEVPVPLITFPTMDDATQTSTPVEEILGKREIDSLELTTVDKITEWMQSNEFERTDSLIVENGDILSLSGTTNAIKEAMITSQDTISLTDDNRMNTELIEQDIELDDRYCLELLAKRNMGDQLQGDYSRDLADDVENLNCSASAQVSVDIDENFDETATYTSLQIALKNPIEIPMDNSLLKAQVKTSTNENLENDLVVLKNPPAPRIKLSAAQTPQTPPSPPIPLPPRTPSPIGEQFLPPLPPKRKPSQELWAGANTDTSPCNTANSSRNSSISSRPPSQIIIMRTPDQSPTKRSATSTPSPKKKQSFFSRLFSRKKSKPDTTVSGDESNSKATTPNQSREPSIGNFSMNDNNRASIRSVKSLQPNSLGLEPKCNEKTGKAVGRSASSVSGKRPIQRNADVIHIPLKGDSSETLGRQERSYSSSCTLRYDGGLLDRKTLSALQLADIPISDGNMELIAIADRQSIKNLCEGAYGVVLDPGVDLSEAEHFALYTSLPSECDVGNDENVFANQPVLTPEEVAMRLAAANGLH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01260766;
90% Identity
iTF_00921872; iTF_00258636; iTF_00199633; iTF_00259546;
80% Identity
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