Llun015306.1
Basic Information
- Insect
- Lordithon lunulatus
- Gene Symbol
- -
- Assembly
- GCA_963942505.1
- Location
- OZ012668.1:53299964-53306823[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00031 16 7.2 0.1 25 48 21 44 9 47 0.87 2 7 0.00065 33 6.2 0.2 27 44 191 208 186 217 0.88 3 7 4.5e-07 0.023 16.3 0.5 27 50 219 242 214 245 0.93 4 7 0.037 1.9e+03 0.5 0.0 23 43 272 292 255 297 0.81 5 7 0.062 3.1e+03 -0.2 0.1 27 44 304 321 301 329 0.83 6 7 2.3e-06 0.11 14.0 0.1 22 45 327 350 323 356 0.90 7 7 0.044 2.2e+03 0.3 0.1 25 46 358 379 350 383 0.85
Sequence Information
- Coding Sequence
- ATGTTAGCGCATAAAAACAGTGGAAAATCAGATGTTGATACTAAAAAGCCTGATTTTCAAGTAACCTGTTCAATATGCTCAAACACGTTTAGTAGAAGACTAAATTTAATAAGGCATTTAAAACAAGTACATAAAGTGCATGATGTACCCCGTTATTATTGCAACGAATGTAACATGACATTCTCCGAAAGACACGATTATAAAGCACATAAAAATACAACGCATTACATCAAAAAGGAATTCATGTGTAACTTTTGTAATATCTCTCATTTCTCGCGAATTGCGTTAAACCAGCATCTGCTCACTCATGCCGATAATGATGAAGAAGCTCTAAATGAACACACAAATTCAGAACAACCCAAACCAAAAACTCGACGTAAAGTTCAAGATATTGTCAAGCAATATTTCTGCGATCAATGCGATAAAGGCTTCACGCGGAAACACGACATggagaaacataaaaaacaaaagcACGATGTTAAAGAGCTTGTAAGCTCAAATAAATTACTGCAAAGGGATATTTTAAATAGCTGCAAGTTTGTAGATGGCGATAACAAAACGTATTACAAATGCGTGGACTGCCGCAAAGTCTTCAAGCAGTCGTACAATTTAATGCGGCATCGCACTATACACACGGGGGTGCGTGCATTTTTCTGCCATATCTGCGGAAAGGATTTTAGAATATCTACTAACTTGCGTAGACATTTGGACCAACACCATTATGCGATTAAAAAGTATGATTGTGATTTGTGCGATAAGTCCTTCCGAGCGAAGGCTAGCAGGGACGAACACCGGAATATTCATACAAACATTCGGCCCTTTGTGTGCGATATTTGTGGGAAAATGTTTAAACAACGATCGGCGTTGTATGTGCACAATCTGTTCCAtgcgaataattttaaattcaagtgTAATGTTTGTGATAAAAAGTTTCGGCGTGCTAGGGAGTTGAATGTGCACAGTTGGGTTCATACGGGGAACAAGCCGCATAGTTGTGAGATTTGTGGGTCTATGTTTAGGCTATCGCAGGATCTTAAAAGACACTTAAAGAGGCATGATCGGTTGAAGGAGTGTGCTTGCGCGGAGTGCGGTAGTACGTTCAGCCAGGAGAGATATTTGAAATTGCATATGAAAATACATGAGGTCAAAGTGGATGAGTCGAGTCTGACTTAG
- Protein Sequence
- MLAHKNSGKSDVDTKKPDFQVTCSICSNTFSRRLNLIRHLKQVHKVHDVPRYYCNECNMTFSERHDYKAHKNTTHYIKKEFMCNFCNISHFSRIALNQHLLTHADNDEEALNEHTNSEQPKPKTRRKVQDIVKQYFCDQCDKGFTRKHDMEKHKKQKHDVKELVSSNKLLQRDILNSCKFVDGDNKTYYKCVDCRKVFKQSYNLMRHRTIHTGVRAFFCHICGKDFRISTNLRRHLDQHHYAIKKYDCDLCDKSFRAKASRDEHRNIHTNIRPFVCDICGKMFKQRSALYVHNLFHANNFKFKCNVCDKKFRRARELNVHSWVHTGNKPHSCEICGSMFRLSQDLKRHLKRHDRLKECACAECGSTFSQERYLKLHMKIHEVKVDESSLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00920851;
- 90% Identity
- iTF_00920851;
- 80% Identity
- iTF_00920851;